Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a23
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   6.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 467 IF*MTIQSKVTYYTLNLL 414
           +F +T++ K  +YT+NL+
Sbjct: 227 VFNITLRRKTLFYTVNLI 244


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 66  SEESVIIYASKXENCVVKFLTL 1
           SEE+  + ASK   CV K+ T+
Sbjct: 108 SEENPHLKASKLVQCVSKYKTM 129


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 104 VNNCKNRTYYIP*NNFRNE*FTSNY*N 184
           ++N  N  Y    NN+ N  + +NY N
Sbjct: 323 IHNNNNYKYNYNNNNYNNNNYNNNYNN 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,625
Number of Sequences: 438
Number of extensions: 2951
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)