Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a22
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         30   0.27 
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   1.9  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    27   2.5  

>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 229 IIYIYHITSWVNYVVCLMCFCWHFFGNSHTSKIITYLLIIGAYIIV*LY 375
           ++YI  I  ++NYVV ++C+  ++ G S    +   L +IG  I V +Y
Sbjct: 33  LLYISIIFLFLNYVVDIVCYVKNYNGFSFFCWVFLNLGVIGIIITVIIY 81


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +2

Query: 494 LVKKRASLKGRLTTFRKYIEELSGTLNQQQVNELQLRIGKIELLFEQYDVVQTKIE 661
           +V + +++   L      + + +GTL Q ++   +L +G +    E  DVVQ  I+
Sbjct: 388 VVVRSSNIPEELGRIEYVLTDKTGTLTQNEMEMKKLHVGTMGFSAESMDVVQACIQ 443


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 684 ELKSSARHSILVCTTSYCSNNNSILPILNCNSFTC 580
           EL    ++S   C   +  N NSIL  L+CN + C
Sbjct: 32  ELLVEKQYSEEHCAYCHIKNPNSILKCLHCNKWFC 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,047
Number of Sequences: 5004
Number of extensions: 49244
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)