Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a22
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678...    30   2.0  
01_01_0473 - 3478660-3480338,3480507-3480609                           29   4.6  
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97...    28   6.0  
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750...    28   8.0  

>03_02_0994 -
           13067254-13067379,13067483-13067521,13067824-13067893,
           13068025-13068116,13068237-13068319,13068590-13068633,
           13068682-13068800,13068883-13068915,13069152-13069239,
           13069364-13069413
          Length = 247

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +1

Query: 274 CLMCFCWHFF-GNSHTSKI 327
           CL+CFCW +  GN+ T+KI
Sbjct: 89  CLLCFCWIWLTGNTSTAKI 107


>01_01_0473 - 3478660-3480338,3480507-3480609
          Length = 593

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
 Frame = +2

Query: 482 EEKELVKKRASLKGRLTTFRKYIEEL------SGTLNQQQVNELQLRIG----KIELLFE 631
           E ++L +  ASL+G+LT+    +++L      +   +++Q+++L   I     K+ELL  
Sbjct: 418 EIQKLKEANASLEGKLTSTESQLQQLHAEKSEASISSEKQISDLNQAIADLETKLELLSS 477

Query: 632 QYDVVQTKIECLADDFSSQ 688
           +   V  K+  L  D +++
Sbjct: 478 EKTTVDNKVASLLTDVTAR 496


>09_01_0066 -
           978018-978500,978588-979034,979113-979412,979521-979855,
           980325-980703
          Length = 647

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 431 PD*LACFCPNTSKMSEKEEKELVKKRASLKGRLTT-FRKYIEELSGTLNQQQVNELQ 598
           PD    +   TS  +EK+ +   K RAS++  LT+ F K +E +   + Q+   E Q
Sbjct: 388 PDYAWQYKKRTSNKAEKDARLEAKIRASIRAELTSEFDKKLESMRAKIRQEIREEQQ 444


>07_03_1424 - 26474464-26474514,26474549-26474635,26474905-26475006,
            26475149-26475260,26475405-26475463,26475559-26475633,
            26475734-26475832,26476128-26476343,26476426-26476500,
            26476583-26476670,26476757-26476902,26477240-26477347,
            26477417-26478436,26478437-26478715,26479471-26480520,
            26480636-26480692,26480780-26480837,26481379-26481458,
            26481598-26481654,26481764-26481833,26481967-26482202,
            26482341-26482445,26482534-26482680,26482758-26482823,
            26482916-26482979,26484040-26484200,26484308-26484400,
            26484487-26484600,26484684-26484803,26484893-26484976,
            26485061-26485216,26485389-26485811
          Length = 1885

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/85 (22%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
 Frame = +2

Query: 452  CPNTSKMSEKEEK--ELVKKRASLKGRLTTFRKYI--EELSGTL--NQQQVNELQLRIGK 613
            C  TS+++  +    +++++   +K  +T +   +  EEL   L  +QQQ+ + + +  +
Sbjct: 1693 CMLTSRLAAVDSMTHDIIRELLGVKLDMTNYANMLDQEELQKLLMASQQQIEQSKAKDVE 1752

Query: 614  IELLFEQYDVVQTKIECLADDFSSQ 688
            +++L EQ+D +  + + L DD   +
Sbjct: 1753 LDMLKEQFDHLIQERDSLFDDMDQR 1777


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,635,300
Number of Sequences: 37544
Number of extensions: 253894
Number of successful extensions: 555
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)