Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a22
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-4|CAB55144.1|  281|Caenorhabditis elegans Hypothetical ...    31   0.77 
Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr...    29   4.1  
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.     29   4.1  
AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z66500-8|CAE17939.1|  312|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical ...    28   7.2  
U41508-2|AAN39665.2|  552|Caenorhabditis elegans Set (trithorax/...    27   9.5  
U00064-2|AAD31934.2|  329|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AL117204-4|CAB55144.1|  281|Caenorhabditis elegans Hypothetical
           protein Y116A8C.11 protein.
          Length = 281

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
 Frame = +2

Query: 476 EKEEKELVKKRASLKGRLTTFRKYIEE------LSGTLNQQQVNELQLRIGKIELLFEQY 637
           EKE + L  +   LK R+ +  K +++      ++ +LN++ +NEL L    IE L +Q+
Sbjct: 42  EKENENLADENEILKTRIASLEKDVKQEKNATKMAKSLNEETINELTLSEDLIESLKKQF 101

Query: 638 DVVQTKIE 661
               +KIE
Sbjct: 102 QA--SKIE 107


>Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical
           protein K04H4.2b protein.
          Length = 788

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 675 SSARHSILVCTTSYCSNNNSILPILNCNSFTCC 577
           S  + S LVCT S CSN+N    +  CN+  CC
Sbjct: 164 SRQQASGLVCTFSSCSNSNP-CSVGTCNNGYCC 195


>Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical
           protein K04H4.2a protein.
          Length = 628

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 675 SSARHSILVCTTSYCSNNNSILPILNCNSFTCC 577
           S  + S LVCT S CSN+N    +  CN+  CC
Sbjct: 164 SRQQASGLVCTFSSCSNSNP-CSVGTCNNGYCC 195


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
           protein K04H4.2c protein.
          Length = 1446

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 654 LVCTTSYCSNNNSILPILNCNSFTCC 577
           LVCT S CSN+N    +  CN+  CC
Sbjct: 685 LVCTFSSCSNSNP-CSVGTCNNGYCC 709


>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 557 LSGTLNQQQVNELQLRIGKIELLFEQYDVVQTKIECLADDFSSQ 688
           L   +NQ+Q+N+ Q RIG  ++ F+    V   IE L DD  +Q
Sbjct: 749 LQALINQKQLNDEQFRIGHTKVFFKA--GVVAHIEDLRDDKLNQ 790


>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 557 LSGTLNQQQVNELQLRIGKIELLFEQYDVVQTKIECLADDFSSQ 688
           L   +NQ+Q+N+ Q RIG  ++ F+    V   IE L DD  +Q
Sbjct: 749 LQALINQKQLNDEQFRIGHTKVFFKA--GVVAHIEDLRDDKLNQ 790


>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
          Length = 1938

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 557 LSGTLNQQQVNELQLRIGKIELLFEQYDVVQTKIECLADDFSSQ 688
           L   +NQ+Q+N+ Q RIG  ++ F+    V   IE L DD  +Q
Sbjct: 749 LQALINQKQLNDEQFRIGHTKVFFKA--GVVAHIEDLRDDKLNQ 790


>AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical
           protein T22D1.4 protein.
          Length = 586

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 688 LRAEIVSEAFYFSLYYVILFK**FDLTDS 602
           LR  +++ AF+FSL++VI+    FD T S
Sbjct: 419 LREPLLASAFFFSLFFVIIVYSRFDFTIS 447


>Z66500-8|CAE17939.1|  312|Caenorhabditis elegans Hypothetical
           protein T05C12.11 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 507 RFLTNSFSSFSLILEVFGQKQAS 439
           RF T+S SS+  ILEVFG   +S
Sbjct: 191 RFFTSSKSSYKRILEVFGSTSSS 213


>AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical
           protein W08E12.2 protein.
          Length = 120

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 639 SYCSNNNSILPILNCNSFTCC 577
           SYC NN       N N+F+CC
Sbjct: 80  SYCPNNFGYSSCCNSNNFSCC 100


>U41508-2|AAN39665.2|  552|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 20,
           isoform b protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +2

Query: 467 KMSEKEEKELVKKRASLKGRLTTFRKYIEELSGTLNQQQVNELQLRIGKI 616
           +++EKE + + + +++L GR  + R Y+EE       Q+  E + +I KI
Sbjct: 143 QLAEKEYERIGELQSALIGRANSGRCYLEEKRKRSTLQRRREARKKIEKI 192


>U00064-2|AAD31934.2|  329|Caenorhabditis elegans Hypothetical
           protein ZC155.7 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +2

Query: 476 EKEEKELVKKRASLKGRLTTFRKYIEELSGTLNQQQVNELQLR 604
           EKEEK++ +    +   LT  ++ I  +SG+ N+++  + +LR
Sbjct: 118 EKEEKQMEQTTEQITQMLTHCQRLIRMISGSHNKEKPMQRKLR 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,882,205
Number of Sequences: 27780
Number of extensions: 266669
Number of successful extensions: 713
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)