Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a22
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.3  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   8.3  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   8.3  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   8.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +2

Query: 560  SGTLNQQQVNELQLRIGKIELLFEQ 634
            +GT++QQ+     ++ GK+ ++ E+
Sbjct: 1082 AGTVSQQKQKRRMVKYGKLVMIHEE 1106


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -2

Query: 684 ELKSSARHSILVCTTSYCSNNNSILPILNCNSFTCC*FNV 565
           E + S  H I+   ++  + NN+    L CN++    +N+
Sbjct: 72  EREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYKKLYYNI 111


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -2

Query: 684 ELKSSARHSILVCTTSYCSNNNSILPILNCNSFTCC*FNV 565
           E + S  H I+   ++  + NN+    L CN++    +N+
Sbjct: 72  EREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYKKLYYNI 111


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -2

Query: 684 ELKSSARHSILVCTTSYCSNNNSILPILNCNSFTCC*FNV 565
           E + S  H I+   ++  + NN+    L CN++    +N+
Sbjct: 72  EREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYRKLYYNI 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,683
Number of Sequences: 438
Number of extensions: 3830
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)