Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a21
         (695 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   3.0  
AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein p...    23   7.0  
AJ970245-1|CAI96717.1|  134|Anopheles gambiae putative reverse t...    23   9.2  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 355 QWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQ 480
           Q E+ K    FE+ I +IN NL +  +   +K  QR+ +  Q
Sbjct: 812 QQERAKKRAEFEQQIDRINNNLEFERSKDTSKNVQRWERAVQ 853


>AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 306 YLFVYEDS*ENNVPSKTMGESETVQ 380
           Y  V ++S  NN   KT+G+ ETV+
Sbjct: 315 YAKVVQNSIGNNGTVKTLGQMETVE 339


>AJ970245-1|CAI96717.1|  134|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 134

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -1

Query: 425 YNKFSFI*CIA--FSKFLDSFTFSHCFAGNIILSAVFIYK 312
           Y   S + C+   F K L+S    H F  NII  + F ++
Sbjct: 2   YRPISLLSCLGKIFEKLLESRMALHTFNNNIIPKSQFGFR 41


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 714,221
Number of Sequences: 2352
Number of extensions: 14755
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70668195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)