Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a21
         (695 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC050528-1|AAH50528.1|  300|Homo sapiens RNA binding motif prote...   268   1e-71
BC039740-1|AAH39740.1|  300|Homo sapiens RNA binding motif prote...   268   1e-71
BC028230-1|AAH28230.1|  300|Homo sapiens RNA binding motif prote...   268   1e-71
AK027469-1|BAB55134.1|  300|Homo sapiens protein ( Homo sapiens ...   268   1e-71
AF251062-1|AAK34952.1|  300|Homo sapiens RNA binding protein pro...   268   1e-71
BC015965-1|AAH15965.1|  127|Homo sapiens Unknown (protein for IM...   185   2e-46

>BC050528-1|AAH50528.1|  300|Homo sapiens RNA binding motif protein
           13 protein.
          Length = 300

 Score =  268 bits (658), Expect = 1e-71
 Identities = 122/189 (64%), Positives = 150/189 (79%), Gaps = 1/189 (0%)
 Frame = +1

Query: 130 MQHDDVVWAII-NKTHCSHKVTTKTQQFCRNEYNLTGLCSRSSCPLANSKYATIREENGI 306
           MQ DDV+W  + NK  CS K+ TKTQ FCRNEY+LTGLC+RSSCPLANS+YATI+EE G 
Sbjct: 1   MQSDDVIWDTLGNKQFCSFKIRTKTQSFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQ 60

Query: 307 IYLYMKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYL 486
            YLYMK  ER  FP + WE+V+LS+N+EKA+ QI+ENL+YWP FI+ KCKQRF KITQYL
Sbjct: 61  CYLYMKVIERAAFPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYL 120

Query: 487 IRMRKLKLRRVKELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYNDIYN 666
           IR+RKL L+R ++LVP+ +K+         KAL+AA++DNAIEK+LLERLK+ TY DIYN
Sbjct: 121 IRIRKLTLKRQRKLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYN 180

Query: 667 FPQMAFDAA 693
           FP  AFD A
Sbjct: 181 FPIHAFDKA 189


>BC039740-1|AAH39740.1|  300|Homo sapiens RNA binding motif protein
           13 protein.
          Length = 300

 Score =  268 bits (658), Expect = 1e-71
 Identities = 122/189 (64%), Positives = 150/189 (79%), Gaps = 1/189 (0%)
 Frame = +1

Query: 130 MQHDDVVWAII-NKTHCSHKVTTKTQQFCRNEYNLTGLCSRSSCPLANSKYATIREENGI 306
           MQ DDV+W  + NK  CS K+ TKTQ FCRNEY+LTGLC+RSSCPLANS+YATI+EE G 
Sbjct: 1   MQSDDVIWDTLGNKQFCSFKIRTKTQSFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQ 60

Query: 307 IYLYMKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYL 486
            YLYMK  ER  FP + WE+V+LS+N+EKA+ QI+ENL+YWP FI+ KCKQRF KITQYL
Sbjct: 61  CYLYMKVIERAAFPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYL 120

Query: 487 IRMRKLKLRRVKELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYNDIYN 666
           IR+RKL L+R ++LVP+ +K+         KAL+AA++DNAIEK+LLERLK+ TY DIYN
Sbjct: 121 IRIRKLTLKRQRKLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYN 180

Query: 667 FPQMAFDAA 693
           FP  AFD A
Sbjct: 181 FPIHAFDKA 189


>BC028230-1|AAH28230.1|  300|Homo sapiens RNA binding motif protein
           13 protein.
          Length = 300

 Score =  268 bits (658), Expect = 1e-71
 Identities = 122/189 (64%), Positives = 150/189 (79%), Gaps = 1/189 (0%)
 Frame = +1

Query: 130 MQHDDVVWAII-NKTHCSHKVTTKTQQFCRNEYNLTGLCSRSSCPLANSKYATIREENGI 306
           MQ DDV+W  + NK  CS K+ TKTQ FCRNEY+LTGLC+RSSCPLANS+YATI+EE G 
Sbjct: 1   MQSDDVIWDTLGNKQFCSFKIRTKTQSFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQ 60

Query: 307 IYLYMKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYL 486
            YLYMK  ER  FP + WE+V+LS+N+EKA+ QI+ENL+YWP FI+ KCKQRF KITQYL
Sbjct: 61  CYLYMKVIERAAFPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYL 120

Query: 487 IRMRKLKLRRVKELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYNDIYN 666
           IR+RKL L+R ++LVP+ +K+         KAL+AA++DNAIEK+LLERLK+ TY DIYN
Sbjct: 121 IRIRKLTLKRQRKLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYN 180

Query: 667 FPQMAFDAA 693
           FP  AFD A
Sbjct: 181 FPIHAFDKA 189


>AK027469-1|BAB55134.1|  300|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14563 fis, clone NT2RM4000215, weakly similar to
           MAK16 PROTEIN. ).
          Length = 300

 Score =  268 bits (658), Expect = 1e-71
 Identities = 122/189 (64%), Positives = 150/189 (79%), Gaps = 1/189 (0%)
 Frame = +1

Query: 130 MQHDDVVWAII-NKTHCSHKVTTKTQQFCRNEYNLTGLCSRSSCPLANSKYATIREENGI 306
           MQ DDV+W  + NK  CS K+ TKTQ FCRNEY+LTGLC+RSSCPLANS+YATI+EE G 
Sbjct: 1   MQSDDVIWDTLGNKQFCSFKIRTKTQSFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQ 60

Query: 307 IYLYMKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYL 486
            YLYMK  ER  FP + WE+V+LS+N+EKA+ QI+ENL+YWP FI+ KCKQRF KITQYL
Sbjct: 61  CYLYMKVIERAAFPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYL 120

Query: 487 IRMRKLKLRRVKELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYNDIYN 666
           IR+RKL L+R ++LVP+ +K+         KAL+AA++DNAIEK+LLERLK+ TY DIYN
Sbjct: 121 IRIRKLTLKRQRKLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYN 180

Query: 667 FPQMAFDAA 693
           FP  AFD A
Sbjct: 181 FPIHAFDKA 189


>AF251062-1|AAK34952.1|  300|Homo sapiens RNA binding protein
           protein.
          Length = 300

 Score =  268 bits (658), Expect = 1e-71
 Identities = 122/189 (64%), Positives = 150/189 (79%), Gaps = 1/189 (0%)
 Frame = +1

Query: 130 MQHDDVVWAII-NKTHCSHKVTTKTQQFCRNEYNLTGLCSRSSCPLANSKYATIREENGI 306
           MQ DDV+W  + NK  CS K+ TKTQ FCRNEY+LTGLC+RSSCPLANS+YATI+EE G 
Sbjct: 1   MQSDDVIWDTLGNKQFCSFKIRTKTQSFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQ 60

Query: 307 IYLYMKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYL 486
            YLYMK  ER  FP + WE+V+LS+N+EKA+ QI+ENL+YWP FI+ KCKQRF KITQYL
Sbjct: 61  CYLYMKVIERAAFPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYL 120

Query: 487 IRMRKLKLRRVKELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYNDIYN 666
           IR+RKL L+R ++LVP+ +K+         KAL+AA++DNAIEK+LLERLK+ TY DIYN
Sbjct: 121 IRIRKLTLKRQRKLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYN 180

Query: 667 FPQMAFDAA 693
           FP  AFD A
Sbjct: 181 FPIHAFDKA 189


>BC015965-1|AAH15965.1|  127|Homo sapiens Unknown (protein for
           IMAGE:4045270) protein.
          Length = 127

 Score =  185 bits (450), Expect = 2e-46
 Identities = 82/127 (64%), Positives = 100/127 (78%), Gaps = 1/127 (0%)
 Frame = +1

Query: 130 MQHDDVVWAII-NKTHCSHKVTTKTQQFCRNEYNLTGLCSRSSCPLANSKYATIREENGI 306
           MQ DDV+W  + NK  CS K+ TKTQ FCRNEY+LTGLC+RSSCPLANS+YATI+EE G 
Sbjct: 1   MQSDDVIWDTLGNKQFCSFKIRTKTQSFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQ 60

Query: 307 IYLYMKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYL 486
            YLYMK  ER  FP + WE+V+LS+N+EKA+ QI+ENL+YWP FI+ KCKQRF KITQ  
Sbjct: 61  CYLYMKVIERAAFPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQKK 120

Query: 487 IRMRKLK 507
            + +K K
Sbjct: 121 KKKKKKK 127


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,239,085
Number of Sequences: 237096
Number of extensions: 1854115
Number of successful extensions: 7905
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7905
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)