Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28a20
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0524 - 3845637-3845727,3845803-3845896,3846415-3846497,384... 87 1e-17
04_01_0383 + 5085697-5085724,5085816-5085927,5087249-5087285,508... 75 5e-14
01_05_0685 + 24273331-24273569,24275429-24275465,24275739-242758... 73 2e-13
05_07_0299 - 29073900-29073984,29074125-29074158,29074269-290743... 71 1e-12
04_04_1531 - 34184899-34185030,34185130-34185240,34185344-341854... 58 7e-09
04_04_1530 - 34182235-34182336,34182436-34182543,34183627-341837... 57 2e-08
04_04_1532 - 34187153-34187308,34187426-34187551,34187856-341879... 36 0.026
06_03_1001 + 26817231-26818246,26818341-26818525,26818614-268189... 31 0.98
11_01_0282 + 2093451-2094668 29 4.0
07_01_0882 + 7342606-7342842,7343601-7344245,7344515-7344907 29 4.0
06_03_0449 + 20907491-20910146,20910313-20910782 29 4.0
03_06_0224 - 32483363-32483671,32483765-32483929,32484957-32485301 29 4.0
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 29 5.2
08_02_1370 + 26457276-26457482,26457600-26457721,26458240-264582... 28 9.2
>01_01_0524 -
3845637-3845727,3845803-3845896,3846415-3846497,
3846587-3846737,3847113-3847217,3847351-3847420,
3847551-3847587,3848155-3848257,3848441-3848480
Length = 257
Score = 87.0 bits (206), Expect = 1e-17
Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Frame = +2
Query: 203 TSITINFNKMSKLGALHITKHSGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVK 382
+S+ K + G H+ + GA + AT+++ HG G GA W +L+ E P++K
Sbjct: 8 SSVASGGGKRLEYGRTHVVRPKGAHK-ATIVWLHGLGDNGAS---WSQLL-ETLPLPNIK 62
Query: 383 VLFPTAPLQPYTPAGGMMSNVWFDRANITPDVPEKLDSLARIETEVKNLIKTENDAGIPS 562
+ PTAP +P GG S WFD A+++ D P+ ++ L V NL+ TE P+
Sbjct: 63 WICPTAPTRPVAVFGGFPSTAWFDVADLSEDAPDDVEGLDASAAHVANLLSTE-----PA 117
Query: 563 D-RIIVGGFSMGGALAFHT 616
D ++ VGGFSMG A A ++
Sbjct: 118 DIKLGVGGFSMGAATALYS 136
>04_01_0383 +
5085697-5085724,5085816-5085927,5087249-5087285,
5087512-5087581,5087704-5087808,5088022-5088172,
5088257-5088339,5089152-5089372,5089465-5089501,
5089668-5089753
Length = 309
Score = 75.4 bits (177), Expect = 5e-14
Identities = 42/125 (33%), Positives = 66/125 (52%)
Frame = +2
Query: 242 GALHITKHSGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTP 421
G +I + G Q AT+++ HG G GA W +L+ + S P++K + PTA +P T
Sbjct: 20 GRTYIVRPKGRHQ-ATIVWLHGLGDNGAS---WSQLL-DSLSLPNIKWICPTAATRPVTA 74
Query: 422 AGGMMSNVWFDRANITPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGA 601
GG WFD +I+ D + ++ L + NL+ +E P ++ +GGFSMG A
Sbjct: 75 FGGFPCTAWFDVEDISVDGRDDIEGLDASAAHIANLLSSEP----PDVKLGIGGFSMGAA 130
Query: 602 LAFHT 616
A H+
Sbjct: 131 AALHS 135
>01_05_0685 +
24273331-24273569,24275429-24275465,24275739-24275808,
24275978-24276082,24276205-24276355,24276454-24276536,
24276619-24276712,24276796-24276883
Length = 288
Score = 73.3 bits (172), Expect = 2e-13
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Frame = +2
Query: 242 GALHITKHSGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTP 421
G ++ + G Q AT+++ HG G GA W +L+ + P++K + PTAP +P
Sbjct: 53 GRTYVVRPKGRHQ-ATIVWLHGLGDNGAS---WSQLL-DSLPLPNIKWICPTAPTRPVAA 107
Query: 422 AGGMMSNVWFDRANITPDVPEKLDSLARIETEVKNLIKTENDAGIPSD-RIIVGGFSMGG 598
GG WFD + + D + ++ L V NL+ +E PSD ++ +GGFSMG
Sbjct: 108 FGGFPCTAWFDVEDTSVDGRDDIEGLDASAAHVANLLSSE-----PSDVKLGIGGFSMGA 162
Query: 599 ALAFHT 616
A A H+
Sbjct: 163 AAALHS 168
>05_07_0299 -
29073900-29073984,29074125-29074158,29074269-29074351,
29074457-29074607,29074853-29074957,29075099-29075168,
29075374-29075410,29076732-29076843,29076956-29076983
Length = 234
Score = 70.9 bits (166), Expect = 1e-12
Identities = 39/125 (31%), Positives = 65/125 (52%)
Frame = +2
Query: 242 GALHITKHSGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTP 421
G ++ + G Q AT+++ HG G GA W +L+ + S P++K + PTA QP T
Sbjct: 20 GRTYVVRPKGRHQ-ATIVWLHGLGDNGAS---WSQLL-DSLSLPNIKWICPTAATQPVTA 74
Query: 422 AGGMMSNVWFDRANITPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGA 601
GG WFD + + D + ++ L + NL+ +E P ++ +GGFSMG A
Sbjct: 75 FGGFPCTAWFDVEDTSVDGRDDIEGLDASAAHIANLLSSEP----PDVKLGIGGFSMGAA 130
Query: 602 LAFHT 616
+ ++
Sbjct: 131 ASLYS 135
>04_04_1531 -
34184899-34185030,34185130-34185240,34185344-34185465,
34185541-34185664,34185815-34185867,34185984-34186146
Length = 234
Score = 58.0 bits (134), Expect = 7e-09
Identities = 43/155 (27%), Positives = 60/155 (38%), Gaps = 2/155 (1%)
Frame = +2
Query: 290 VIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWF--DRAN 463
V++ HGSG TG + + V V+ FPTAP GG + WF
Sbjct: 10 VLWLHGSGQTGEESRAQVAPYFAAPELASVRFSFPTAPTSSIPCYGGEVITAWFAIPEVP 69
Query: 464 ITPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLA 643
IT + + V ++ E AG I V G S GGALA + + L
Sbjct: 70 ITARTARDEKEVLKAVERVHEMLDGEVAAGTSPSNIFVCGLSQGGALAIASVLLYPMTLG 129
Query: 644 GVFAFSSFLNYNSAVYDELKNNTGVTYPPLLQIHG 748
G FS L + + + + T P+L HG
Sbjct: 130 GCVVFSGSLPLSKTFAESIPSEARKT--PVLWFHG 162
>04_04_1530 -
34182235-34182336,34182436-34182543,34183627-34183748,
34183817-34183961,34184045-34184097,34184187-34184478
Length = 273
Score = 56.8 bits (131), Expect = 2e-08
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 9/170 (5%)
Frame = +2
Query: 266 SGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNV 445
+ A+ + V++ HG G +G E +R F K FP+AP P + G +
Sbjct: 46 AAARNRSFVLWLHGLGDSGP-ANEPIRNFFSAPEFRLTKWAFPSAPNSPVSCNHGAVMPS 104
Query: 446 WFD--RANITPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGG------- 598
WFD ++ P+ + + V +I E GIP + I V GFS GG
Sbjct: 105 WFDIHELPMSSGSPQDDSGVLKAVENVHAMIDKEVADGIPPENIFVCGFSQGGRTSALHC 164
Query: 599 ALAFHTGYRWDRKLAGVFAFSSFLNYNSAVYDELKNNTGVTYPPLLQIHG 748
AL + + + L G FS +L + S+V + + T P+L HG
Sbjct: 165 ALTLASVLLYPKTLGGGAVFSGWLPFGSSVTERISPEARKT--PILWSHG 212
>04_04_1532 -
34187153-34187308,34187426-34187551,34187856-34187977,
34188058-34188181,34189671-34189821,34190506-34190720,
34191142-34191343,34191423-34191597,34191746-34192055,
34192141-34192356
Length = 598
Score = 36.3 bits (80), Expect = 0.026
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Frame = +2
Query: 491 DSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAFSSFL 670
+ + R V +I E AG + V G S GGAL + + L G FS FL
Sbjct: 430 EDVLRAVQSVHAMIDREIAAGTNPQDVFVFGLSQGGALGIASVLLHPKTLGGCAVFSGFL 489
Query: 671 NYNSA----VYDELKNNTGVTYPPLLQIHG 748
+NS+ V + K P+L IHG
Sbjct: 490 PFNSSFAVRVTAQAKKLQCGLQTPVLWIHG 519
>06_03_1001 +
26817231-26818246,26818341-26818525,26818614-26818917,
26819956-26820041,26820141-26820298,26820420-26820496,
26820586-26820652
Length = 630
Score = 31.1 bits (67), Expect = 0.98
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = -1
Query: 579 PTIILSLGIPASFSVFIRFFTSVSILANESSFSGTSGVILALSNQTLLIIPPAGVYGCKG 400
P II A+F++ +RF T +++A S G GV+L ++ I+ A G
Sbjct: 538 PKIISCGKTVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHVA-----IVQAALPQGIVP 592
Query: 399 AVGNKTFTCGKENCSTINLTHSLISAPV 316
V K + C + ST + LI+ P+
Sbjct: 593 FVFAKEYNCHPQILSTAVIFGMLIALPI 620
>11_01_0282 + 2093451-2094668
Length = 405
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 503 RIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGY 622
++ EV+ ++ G+P I V G S+G ALA T Y
Sbjct: 227 QVRGEVQRIVSEYGGEGMPPLSITVTGHSLGAALAVLTAY 266
>07_01_0882 + 7342606-7342842,7343601-7344245,7344515-7344907
Length = 424
Score = 29.1 bits (62), Expect = 4.0
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = -1
Query: 555 IPASFSVFIRFFTSVSI-LANESSFSGTSGVILALSNQTLLIIPPAGVYGCKGAVGNKTF 379
IP +F V + F S+ LA ESS + LS + II VY C G G +
Sbjct: 216 IPFTFGVAVFCFEGFSMTLALESSMAERRKFRWVLSQAVVGIII---VYACFGVCGYLAY 272
Query: 378 TCGKENCSTINLTHSLISAPV 316
++ T+NL +S SA V
Sbjct: 273 GEATKDIITLNLPNSWSSAAV 293
>06_03_0449 + 20907491-20910146,20910313-20910782
Length = 1041
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 389 FPTAPLQPYTPAGGMMSNVWFDRANITPDVPEKLDSLARI 508
F AP+ P ++ +W + NIT ++PE SL +
Sbjct: 214 FAPAPVPPAFAKLTKLTYLWMSKMNITGEIPEAFSSLTEL 253
>03_06_0224 - 32483363-32483671,32483765-32483929,32484957-32485301
Length = 272
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -1
Query: 516 SVSILANESSFSGTSGVILALSNQTLLIIPPAGVYGCKGAVGNKTFTCGKENC--STINL 343
S + + SS++ TS ++ N+ L GC G +FTC +NC ST N
Sbjct: 153 SPPVFVSNSSYTVTSFTLVFEFNKGTLQNLYWKANGCSACSGQPSFTCVDQNCAISTANC 212
Query: 342 T 340
T
Sbjct: 213 T 213
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.7 bits (61), Expect = 5.2
Identities = 27/82 (32%), Positives = 37/82 (45%)
Frame = +2
Query: 470 PDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGV 649
P + E + SL I N I+ +N+ G S I+ GFS G A FH R R G
Sbjct: 1814 PFMKESIGSLP-INRHSSNSIQ-QNEVGSSSHESILHGFSDGQAKLFHEMQR--RVKLGK 1869
Query: 650 FAFSSFLNYNSAVYDELKNNTG 715
LN+ + + D L N+G
Sbjct: 1870 LPIEMNLNH-TKLSDPLAENSG 1890
>08_02_1370 +
26457276-26457482,26457600-26457721,26458240-26458293,
26458390-26458431,26458553-26458667,26458746-26458909,
26459280-26459349,26459897-26459995,26460277-26460354
Length = 316
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 646 PSQFSIPSVASVKSQCTSHGKSTNY 572
P F +P+ + QC HG ST Y
Sbjct: 180 PYTFILPATKELPKQCIRHGSSTRY 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,260,250
Number of Sequences: 37544
Number of extensions: 424330
Number of successful extensions: 1025
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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