Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28a19
(357 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 28 0.49
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 1.5
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 26 2.0
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc... 25 2.6
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 25 2.6
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 3.5
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual 25 3.5
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 25 4.6
SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|... 25 4.6
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 4.6
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr... 24 6.1
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 24 6.1
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 24 6.1
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 24 8.0
SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 8.0
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 27.9 bits (59), Expect = 0.49
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 122 GLVILYMSLFVLIYFGFVGALLYVRSTFSDDFQVFQDETYT*VKQRFL 265
GL +L ++ VL YF G+LL + DD ++ Q E + ++++ +
Sbjct: 31 GLSLLQIAANVLSYFAVPGSLLLLVGANVDDIELIQHEMESHLEKKLI 78
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 26.2 bits (55), Expect = 1.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 185 LYVRSTFSDDFQVFQDETYT*VKQRFLKYHFILIK 289
LY R + D++ V Q+E + RFLK +IK
Sbjct: 1303 LYSRDEYQDEYGVLQEEIESTFSNRFLKILNRIIK 1337
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 2.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 128 VILYMSLFVLIYFGFVGALLYVRSTFSDDFQ 220
V L++ LF L+ G + A L +T+SDDF+
Sbjct: 390 VPLWVVLFYLMRSGQLDAALQFVNTYSDDFE 420
>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 167
Score = 25.4 bits (53), Expect = 2.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 219 WKSSENVLLTYNRAPTKPKY 160
W++ ++V L + RAPT P Y
Sbjct: 5 WRNLKSVRLPFRRAPTLPLY 24
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.4 bits (53), Expect = 2.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 81 LHFGLFFCFFVSAEC 37
+H GL+FCFF C
Sbjct: 307 IHLGLWFCFFFLTAC 321
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.0 bits (52), Expect = 3.5
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -1
Query: 303 VPFLHFIKIKWYFKKRCF--THVYVSSWKTWKSS 208
VP L I W + K C TH+ V S +TWK S
Sbjct: 1007 VPGLEEKIIMWSYCKFCKKNTHITVMSEETWKYS 1040
>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 3.5
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +1
Query: 196 EHILG*LPSLPRRNIYMSK--TTLLKI 270
EH+L LPS+P+ I ++K TT KI
Sbjct: 283 EHMLTYLPSIPQEGIRLAKILTTFTKI 309
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 24.6 bits (51), Expect = 4.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 112 HFQRPSNSVHVAIRTDILRFCRSP 183
H PS S H A+RT I +F +P
Sbjct: 347 HGSSPSASRHTALRTSIPKFSWTP 370
>SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 24.6 bits (51), Expect = 4.6
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Frame = -1
Query: 264 KKRCFTHVYVSSWKTWKSSEN---VLLTYNRAPTKPKY 160
KK HVYV + WK+ N V + PT KY
Sbjct: 57 KKLNVVHVYVGNMPQWKTPHNEFRVKFGISAVPTLGKY 94
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 24.6 bits (51), Expect = 4.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 115 NVHFVFEIGYSITFWVIFLFF 53
N+ F F++ +I WV F+FF
Sbjct: 312 NLPFPFDLERAIDDWVFFIFF 332
>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
3|||Manual
Length = 220
Score = 24.2 bits (50), Expect = 6.1
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 53 KKQKNNPKCNTITNFKYKMNIFRGLVILYMSLFVLIYFGFV--GALLYVRSTFSD 211
K +NN T + N V L SLF+L+ F F+ L + +++F+D
Sbjct: 92 KTYENNRHMQTFRLRPFAKNGVTNGVKLAQSLFLLLPFNFIFFACLFFRKASFTD 146
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 24.2 bits (50), Expect = 6.1
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 110 NIFRGLVILYMSLFVLIYFGFVGALLYVRSTFSDDFQVFQDET 238
+IF+ + +L + + IY+ F L+ + DD Q Q E+
Sbjct: 1394 DIFKSMYVLSLDHLLSIYYWFGQPLMEKKLESPDDVQSLQAES 1436
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 24.2 bits (50), Expect = 6.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 104 KMNIFRGLVILYMSLFVLIYFGF 172
KMN ++I+ +SLFV+I+ +
Sbjct: 440 KMNSITWIIIILISLFVIIFTSY 462
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 23.8 bits (49), Expect = 8.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 234 SSWKTWKSSENVLLTYNRAPTKPKYISTNSDM 139
S +T K+SEN T N KP++I+ + D+
Sbjct: 12 SDRQTSKTSENPPHTSNEYSGKPEFINLSPDL 43
>SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 126
Score = 23.8 bits (49), Expect = 8.0
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 249 THVYV--SSWKTWKSSENVLLTYNRAPTKPKYISTNSDMY 136
+H Y+ +S + K ENVL +Y K KY+ ++ +Y
Sbjct: 83 SHEYLRQTSAEANKLYENVLASYKHLCEKIKYLEADNPLY 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,513,521
Number of Sequences: 5004
Number of extensions: 31332
Number of successful extensions: 96
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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