Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a19
         (357 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   2.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   2.5  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   4.4  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   4.4  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 113 IFRGLVILYMSLFVLIYFGFVGALLYVR 196
           +F  L +LY  + V+I+ GF   + ++R
Sbjct: 47  MFTYLHLLYQDVHVMIWIGFGFLMTFLR 74


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 125 LVILYMSLFVLIYFGFVGAL 184
           L++L   +FV+ +FG  GA+
Sbjct: 55  LIVLGSIIFVISFFGCCGAI 74


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 233 RLGRLGSHPRMCS*HTTGL 177
           +LG LG+H R C+  + G+
Sbjct: 92  KLGILGTHGRQCNDTSIGV 110


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 233 RLGRLGSHPRMCS*HTTGL 177
           +LG LG+H R C+  + G+
Sbjct: 93  KLGILGTHGRQCNDTSIGV 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,652
Number of Sequences: 438
Number of extensions: 2126
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)