Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a18
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    28   0.34 
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    26   1.8  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   7.3  

>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 28.3 bits (60), Expect = 0.34
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 132 VCSCVLVMKKCVWSQVH 182
           VC+C+LV K   WSQ+H
Sbjct: 17  VCTCLLVDKVFYWSQIH 33


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
            Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 126  YLPVLENDALIHSSLDWNAFMLAERTRSYFY 34
            Y+PV+  D   H+ + W   ++A     YF+
Sbjct: 956  YIPVINRDVFKHTYIGWEWGVVAVAVMFYFF 986


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -1

Query: 147 AHTSKQNYLPVLENDALIH 91
           ++ S+ N+ P+LEN +L+H
Sbjct: 439 SNQSRYNWEPILENRSLLH 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,362,975
Number of Sequences: 5004
Number of extensions: 25798
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)