Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a18
         (339 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0526 - 24585161-24587119                                         28   1.6  
04_04_1387 - 33172555-33173053,33173136-33173872                       27   2.8  
01_06_1530 - 38019997-38020011,38020705-38020867,38021126-380212...    27   5.0  
12_01_0015 - 111666-111747,112043-112368,112500-112635,112772-11...    26   6.6  
11_01_0015 - 115965-116076,116432-116757,116889-117024,117161-11...    26   6.6  
02_04_0175 + 20642877-20643618,20643844-20643955,20644052-206441...    26   6.6  

>11_06_0526 - 24585161-24587119
          Length = 652

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 213 GIPRPRRLNRCAPE-TRRTFSLQAHTSKQNYLPVLENDALIHS 88
           G+PRP  L   APE T  T ++  H +   YL   E+ A +HS
Sbjct: 355 GLPRPFHLKSPAPETTTTTTAVSLHFNSDYYLK--EDTARVHS 395


>04_04_1387 - 33172555-33173053,33173136-33173872
          Length = 411

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 144 HTSKQNYLPVLENDALIHSSLDWNAFML 61
           H S++  LP    D L+ S L+W  F++
Sbjct: 314 HVSEETMLPANRGDMLLSSRLEWAGFVV 341


>01_06_1530 -
           38019997-38020011,38020705-38020867,38021126-38021211,
           38021297-38022642,38022980-38023193
          Length = 607

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 213 GIPRPRRLNRCAPETRRTFSLQAHTSKQNYLPVLENDALIH 91
           G+PRP RL+R  P     F  +A   +   +P  +   +IH
Sbjct: 181 GVPRPARLSRVVPPGLDEFKTRAIAERGKGVPSGQPGNVIH 221


>12_01_0015 -
           111666-111747,112043-112368,112500-112635,112772-112955,
           113067-113135,113703-113829,115810-116051,116125-116279,
           116751-116822,116908-116976,117058-117129,117217-117349,
           117439-117944,118033-118567,118753-118819
          Length = 924

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 62  NIKAFQSSDE*IRASFSSTGK*FCLLVCA 148
           N+K F S +  +R   S+TG+   ++VCA
Sbjct: 481 NLKEFFSGNSDLRMGHSNTGRTIVIIVCA 509


>11_01_0015 -
           115965-116076,116432-116757,116889-117024,117161-117344,
           117455-117523,118091-118217,120028-120269,120343-120497,
           120969-121040,121126-121194,121276-121347,121435-121567,
           121661-122166,122255-122789,122943-123018
          Length = 937

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 62  NIKAFQSSDE*IRASFSSTGK*FCLLVCA 148
           N+K F S +  +R   S+TG+   ++VCA
Sbjct: 484 NLKEFFSGNSDLRMGHSNTGRTIVIIVCA 512


>02_04_0175 +
           20642877-20643618,20643844-20643955,20644052-20644174,
           20644258-20644509,20644510-20644639,20644719-20644928,
           20645280-20645426
          Length = 571

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 238 AYSYLLNDRYPTASAPQQVCT 176
           A   LLN+RYPT ++ Q  CT
Sbjct: 204 AVKNLLNNRYPTTNSSQLRCT 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,347,044
Number of Sequences: 37544
Number of extensions: 156345
Number of successful extensions: 298
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)