Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a18
         (339 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53333-8|AAA96161.1|  137|Caenorhabditis elegans Hypothetical pr...    28   1.5  
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu...    27   3.4  
AL110500-19|CAB60433.2|  468|Caenorhabditis elegans Hypothetical...    27   3.4  
Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical pr...    26   6.0  
Z46266-3|CAA86413.1|  156|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U41033-2|AAA82373.1|  328|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>U53333-8|AAA96161.1|  137|Caenorhabditis elegans Hypothetical
           protein F36A4.4 protein.
          Length = 137

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 123 LPVLENDALIHSSLDWNAFMLAERTRSYFYCL 28
           L VLE D ++H  L  + F  +ERT++  Y +
Sbjct: 39  LNVLEKDVIVHDLLKQDKFCTSERTKTVKYTI 70


>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
           protein 1 protein.
          Length = 1010

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 108 NDALIHSSLDWNAFMLAERTRSYFY 34
           N++ +HS +D  +FML E  R++ +
Sbjct: 518 NESSVHSEIDKKSFMLIEEERAFMH 542


>AL110500-19|CAB60433.2|  468|Caenorhabditis elegans Hypothetical
           protein Y87G2A.13 protein.
          Length = 468

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -1

Query: 126 YLPVLENDALIHSSLDWNAFML 61
           YL  LEND  I  SLD  AF+L
Sbjct: 260 YLKALENDGRIKKSLDHVAFLL 281


>Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical
           protein T11F9.10 protein.
          Length = 325

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 201 PRRLNRCAPETRRTFSLQAHTSKQNYLPVLENDALIHSSLD 79
           PRR+ +C P+ RR   +    S        ENDALI    D
Sbjct: 45  PRRIRQCGPKFRRRLVVLLGNSPSK---TQENDALIEEDDD 82


>Z46266-3|CAA86413.1|  156|Caenorhabditis elegans Hypothetical
           protein C07B5.6 protein.
          Length = 156

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = -1

Query: 147 AHTSKQNYLPVL----ENDALIHSSLDWNAFMLAERTRSYFYCLGSPL 16
           A TS  ++LP L    END      L++     AE T S +   G P+
Sbjct: 13  ASTSSHSHLPTLPESAENDVSHSEGLEFGEMNSAEYTSSSYISFGEPV 60


>U41033-2|AAA82373.1|  328|Caenorhabditis elegans Hypothetical
           protein K09E3.6 protein.
          Length = 328

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -1

Query: 210 IPRPRRLNRCAPETRRTFSLQAHTS--KQNYLPVLENDALIHSSLDWNAFMLAE 55
           +P PRRL+   P   RT S++ +    K NYL     DA I+S +      L E
Sbjct: 1   MPAPRRLSTPFPGKGRTISVKEYLELPKNNYL----EDATINSYIKKTTLTLLE 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,612,589
Number of Sequences: 27780
Number of extensions: 149535
Number of successful extensions: 327
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)