Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a18
         (339 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   1.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   1.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   2.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   4.1  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          20   9.4  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 184 PVEAPRPWDTDHSAGKNMRKNTLL 255
           P   P  WD   SAG +   NT L
Sbjct: 415 PARTPFQWDDSVSAGFSSSSNTWL 438


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 184 PVEAPRPWDTDHSAGKNMRKNTLL 255
           P   P  WD   SAG +   NT L
Sbjct: 415 PARTPFQWDDSVSAGFSSSSNTWL 438


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 132 QNYLPVLENDALIHSSLDWNAFMLAER 52
           + YLPVL+N    +    WNA +  +R
Sbjct: 447 RRYLPVLKNFPTRYIHEPWNAPLNVQR 473


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +1

Query: 184 PVEAPRPWDTDHSAGKNMRKNTLL 255
           P   P  WD   SAG +    T L
Sbjct: 421 PERTPYQWDNSTSAGFSQTNKTWL 444


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 177 PETRRTFSLQAHTSKQNYLP 118
           P TR+   L  HT+   +LP
Sbjct: 96  PPTRKLPPLHPHTAMVTHLP 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,970
Number of Sequences: 438
Number of extensions: 1629
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)