Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28a17
(666 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 34 0.079
Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical pr... 32 0.42
AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical ... 30 1.7
AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effe... 30 1.7
AC024798-3|AAP86612.1| 361|Caenorhabditis elegans Hypothetical ... 30 1.7
AC024798-2|AAK29923.1| 352|Caenorhabditis elegans Hypothetical ... 30 1.7
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 25 3.9
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 25 3.9
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 25 3.9
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 28 5.2
AC006729-5|AAK84599.2| 568|Caenorhabditis elegans Hypothetical ... 28 5.2
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 28 6.8
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 28 6.8
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 28 6.8
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 28 6.8
AC006747-7|AAF60511.1| 331|Caenorhabditis elegans Hypothetical ... 28 6.8
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical... 27 9.1
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical... 27 9.1
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 34.3 bits (75), Expect = 0.079
Identities = 29/104 (27%), Positives = 36/104 (34%), Gaps = 2/104 (1%)
Frame = +2
Query: 236 PNCPCRSCCCGKPPIVKPCYKQPKIPESYAPRRCYIKPSAPVEG-CTTYKLSYLPVDGCK 412
P P S CCG P+ PC P P AP C P P K + +P + C
Sbjct: 91 PPPPPASPCCGPSPVPAPCCPPPPAPA--AP--CCPPPPPPTPSPLVCCKQAPVPENPCC 146
Query: 413 NLRGEVKKPSPNIVPSCEPMEGCTVQKLSYLPNPV-CVTQSIRP 541
+ P P+ C T P P CV + RP
Sbjct: 147 QIVAAAMPPPPSAPACCVAAPVPTNPCCQPAPRPAPCVCSAPRP 190
>Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical protein
ZK512.5 protein.
Length = 1232
Score = 31.9 bits (69), Expect = 0.42
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Frame = +2
Query: 428 VKKPSPNIVPSCEPMEGCTVQKLSYLPNPVCVTQSI----RPCHHDMWGQGPMQNITTQR 595
VK P P + P+ + +P P V SI R D+W P N T+
Sbjct: 949 VKPPMPTLSMPIPPVSTPIMVSPQPIPIPKPVDASIAKSPRSELDDLWDTSPPSNQTS-- 1006
Query: 596 HDYVPKPSILRESFKPAPKF 655
Y P P ++ S+ PAP F
Sbjct: 1007 --YPPAPRNIQPSYSPAPNF 1024
>AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical
protein Y2H9A.1 protein.
Length = 898
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 164 CLPCPAAGIKSGLRDGKPIDGDMRPNCPCRSCCCGKP 274
C C SG R+ + ++G P+ C SC CG P
Sbjct: 322 CKTC-CRSFHSGCREVETLNGKPIPDDQCESCVCGDP 357
>AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effect
sterile 4 protein.
Length = 898
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 164 CLPCPAAGIKSGLRDGKPIDGDMRPNCPCRSCCCGKP 274
C C SG R+ + ++G P+ C SC CG P
Sbjct: 322 CKTC-CRSFHSGCREVETLNGKPIPDDQCESCVCGDP 357
>AC024798-3|AAP86612.1| 361|Caenorhabditis elegans Hypothetical
protein Y48G9A.9b protein.
Length = 361
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 432 RNLRPTLYRAVNLW--KGVPFKSCHTYRTRCA*RSRSGPATTTCGARV 569
+ LR L + N W +GVP + CHT R + R GP C A +
Sbjct: 231 KELRVNLIKWPN-WPDRGVPDEKCHTVPQRLLAQVRHGPCVVHCSAGI 277
>AC024798-2|AAK29923.1| 352|Caenorhabditis elegans Hypothetical
protein Y48G9A.9a protein.
Length = 352
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 432 RNLRPTLYRAVNLW--KGVPFKSCHTYRTRCA*RSRSGPATTTCGARV 569
+ LR L + N W +GVP + CHT R + R GP C A +
Sbjct: 222 KELRVNLIKWPN-WPDRGVPDEKCHTVPQRLLAQVRHGPCVVHCSAGI 268
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 25.0 bits (52), Expect(2) = 3.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 362 EGCTTYKLSYLPVDGCK 412
E CTT Y P++GCK
Sbjct: 1163 ENCTTNAWDYHPLNGCK 1179
Score = 21.8 bits (44), Expect(2) = 3.9
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Frame = +2
Query: 161 ECLPCPAAGIKSGLRDGKPI-----DGDMRPNC 244
EC PCPA G DG + G+M NC
Sbjct: 1133 ECEPCPAPGQVCDPIDGSCVCPPNTVGEMCENC 1165
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 25.0 bits (52), Expect(2) = 3.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 362 EGCTTYKLSYLPVDGCK 412
E CTT Y P++GCK
Sbjct: 1163 ENCTTNAWDYHPLNGCK 1179
Score = 21.8 bits (44), Expect(2) = 3.9
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Frame = +2
Query: 161 ECLPCPAAGIKSGLRDGKPI-----DGDMRPNC 244
EC PCPA G DG + G+M NC
Sbjct: 1133 ECEPCPAPGQVCDPIDGSCVCPPNTVGEMCENC 1165
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 25.0 bits (52), Expect(2) = 3.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 362 EGCTTYKLSYLPVDGCK 412
E CTT Y P++GCK
Sbjct: 1163 ENCTTNAWDYHPLNGCK 1179
Score = 21.8 bits (44), Expect(2) = 3.9
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Frame = +2
Query: 161 ECLPCPAAGIKSGLRDGKPI-----DGDMRPNC 244
EC PCPA G DG + G+M NC
Sbjct: 1133 ECEPCPAPGQVCDPIDGSCVCPPNTVGEMCENC 1165
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = +2
Query: 251 RSCCCGKPPIVKPC---YK--QPKIPESYAPRRCYIKPS 352
+ CCC PP PC Y+ P P SYA Y PS
Sbjct: 34 QQCCCPPPPPPPPCGGGYEAPPPPPPPSYAGGPSYAGPS 72
>AC006729-5|AAK84599.2| 568|Caenorhabditis elegans Hypothetical
protein Y24D9A.2 protein.
Length = 568
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 251 RSCCCGKPPIVKPCYKQPKIPESYAPRRCYIKPSAPVEGC-TTYKLSYLPV 400
R CC PIV PCY+ K P +R P EGC T S+ P+
Sbjct: 273 RCTCCSSKPIV-PCYENEKCPCFIMNQRMQ-GFQIPREGCGKTEFTSFKPI 321
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 566 PGPTCRGGRAGSTASRTPGSVG 501
PGP + G AG+T++ PGS G
Sbjct: 165 PGPNGQPGAAGTTSTNEPGSPG 186
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 301 LLVTRLNNGRFPTAARSAWAVRSHVAVNG 215
+++ L+ G FPT +AWA+ S+V ++G
Sbjct: 365 MIIHLLDRGDFPTQKEAAWAI-SNVTISG 392
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 301 LLVTRLNNGRFPTAARSAWAVRSHVAVNG 215
+++ L+ G FPT +AWA+ S+V ++G
Sbjct: 365 MIIHLLDRGDFPTQKEAAWAI-SNVTISG 392
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 301 LLVTRLNNGRFPTAARSAWAVRSHVAVNG 215
+++ L+ G FPT +AWA+ S+V ++G
Sbjct: 274 MIIHLLDRGDFPTQKEAAWAI-SNVTISG 301
>AC006747-7|AAF60511.1| 331|Caenorhabditis elegans Hypothetical
protein Y39A3A.4 protein.
Length = 331
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 477 GVPFKSCHTYRTRCA*RSRSGPATTTCGA 563
GVP + CHT R + R GP C A
Sbjct: 230 GVPDEKCHTVPQRLLAQVRHGPCVVHCSA 258
>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
protein Y43F8B.3b protein.
Length = 1398
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +3
Query: 549 TTCGARVPCRTSPHNDTTT-CPSRV 620
+TCGA+ C + DTT CP RV
Sbjct: 552 STCGAQFWCHFGANQDTTVCCPGRV 576
>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
protein Y43F8B.3a protein.
Length = 1816
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +3
Query: 549 TTCGARVPCRTSPHNDTTT-CPSRV 620
+TCGA+ C + DTT CP RV
Sbjct: 970 STCGAQFWCHFGANQDTTVCCPGRV 994
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,421,562
Number of Sequences: 27780
Number of extensions: 436300
Number of successful extensions: 1242
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -