Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a15
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0349 + 2521006-2522439                                           29   4.8  
01_01_0357 - 2816650-2817897                                           28   6.3  
12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009     28   8.4  

>07_01_0349 + 2521006-2522439
          Length = 477

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 7   TRAGYSAITLAFAWRSDRTVTQHAGAGPLGTSSG 108
           T+AG SA  L  AW     V +H   G   T SG
Sbjct: 331 TKAGDSAAGLVVAWTPQAAVLRHPAVGAFVTHSG 364


>01_01_0357 - 2816650-2817897
          Length = 415

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
 Frame = +2

Query: 245 GNGTAACWRRENRRCDAESYHY-------HGIGKRGTRVRRGLALGDIFFRDATRDLFNK 403
           G+G AA WRR+      E  +Y       HG+G+RG+      + G +F  D  + +  K
Sbjct: 308 GDGAAA-WRRDVIWMPTEVSNYPKSYTMAHGLGRRGSVAMMYSSTGAVFVLDLDKKVMEK 366

Query: 404 RLPEQCKPYESSFSDGCPPVDW 469
            + +   P     S   PPV +
Sbjct: 367 AM-DCLLPLRMDHSLDRPPVPY 387


>12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009
          Length = 754

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = +2

Query: 152 TDSCPDVGYYFKRELPSNYLDPGPCFLCFCQGN-GTAACWRRENRRCDAESYHYHGIGKR 328
           +D C D+     R+L   Y +  PC    CQ   G+  C  ++ ++ D   Y        
Sbjct: 300 SDGCQDIDECEMRKLDPKYEELYPCRKGVCQNTPGSYICKCKKGKKSDGTGYGCQPADSP 359

Query: 329 GTRVRRGLALGDI 367
             R+  GL++  I
Sbjct: 360 DYRMVVGLSVSAI 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,468,287
Number of Sequences: 37544
Number of extensions: 445068
Number of successful extensions: 1214
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)