Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28a15
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83125-1|CAB05620.2| 420|Caenorhabditis elegans Hypothetical pr... 30 1.9
AY037795-1|AAK94760.1| 420|Caenorhabditis elegans GLY-16 protein. 30 1.9
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 29 4.3
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 29 4.3
L41807-1|AAA67369.1| 402|Caenorhabditis elegans fatty acid desa... 28 5.7
AL132951-8|CAC44309.1| 402|Caenorhabditis elegans Hypothetical ... 28 5.7
AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous... 28 5.7
AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transien... 28 5.7
AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transien... 28 5.7
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 27 9.9
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 27 9.9
>Z83125-1|CAB05620.2| 420|Caenorhabditis elegans Hypothetical
protein T15D6.2 protein.
Length = 420
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 118 LSSHQSWYQEGQHQHVESPSC 56
+S HQ W++ G H H++ SC
Sbjct: 323 ISRHQIWFESGCHNHMKDGSC 343
>AY037795-1|AAK94760.1| 420|Caenorhabditis elegans GLY-16 protein.
Length = 420
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 118 LSSHQSWYQEGQHQHVESPSC 56
+S HQ W++ G H H++ SC
Sbjct: 323 ISRHQIWFESGCHNHMKDGSC 343
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 416 QCKPYESSFSDGCPPVDWCIGCTVCDCDANGHWDC 520
QCK S +GC + G +C A+GH C
Sbjct: 1831 QCKKSHFSTINGCVKCECGFGADSTECSADGHCKC 1865
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 416 QCKPYESSFSDGCPPVDWCIGCTVCDCDANGHWDC 520
QCK S +GC + G +C A+GH C
Sbjct: 1831 QCKKSHFSTINGCVKCECGFGADSTECSADGHCKC 1865
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 416 QCKPYESSFSDGCPPVDWCIGCTVCDCDANGHWDC 520
QCK S +GC + G +C A+GH C
Sbjct: 1850 QCKKSHFSTINGCVKCECGFGADSTECSADGHCKC 1884
>L41807-1|AAA67369.1| 402|Caenorhabditis elegans fatty acid
desaturase protein.
Length = 402
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 518 SPSARWRRSHRRYNRCTNQLEDSHR*SWI 432
SP W++SH+ ++ TN ++ H WI
Sbjct: 150 SPYFPWQKSHKLHHAFTNHIDKDHGHVWI 178
>AL132951-8|CAC44309.1| 402|Caenorhabditis elegans Hypothetical
protein Y67H2A.8 protein.
Length = 402
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 518 SPSARWRRSHRRYNRCTNQLEDSHR*SWI 432
SP W++SH+ ++ TN ++ H WI
Sbjct: 150 SPYFPWQKSHKLHHAFTNHIDKDHGHVWI 178
>AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous
cation channel proteinprotein.
Length = 816
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +3
Query: 111 LLSTCQTQTIRSNKQIPV---PMLATISNENYRQIIWILDHASSASVRVMARLHVGEERI 281
LL+ T+T N P+ +L I NEN I +LDH ++ +GEE +
Sbjct: 52 LLAGISTETFNINCLDPLGRNALLIAIENENIEMIELLLDHNIETGDAIL--YAIGEENV 109
Query: 282 EDV 290
E V
Sbjct: 110 EAV 112
>AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform a
protein.
Length = 816
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +3
Query: 111 LLSTCQTQTIRSNKQIPV---PMLATISNENYRQIIWILDHASSASVRVMARLHVGEERI 281
LL+ T+T N P+ +L I NEN I +LDH ++ +GEE +
Sbjct: 52 LLAGISTETFNINCLDPLGRNALLIAIENENIEMIELLLDHNIETGDAIL--YAIGEENV 109
Query: 282 EDV 290
E V
Sbjct: 110 EAV 112
>AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform b
protein.
Length = 886
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +3
Query: 111 LLSTCQTQTIRSNKQIPV---PMLATISNENYRQIIWILDHASSASVRVMARLHVGEERI 281
LL+ T+T N P+ +L I NEN I +LDH ++ +GEE +
Sbjct: 52 LLAGISTETFNINCLDPLGRNALLIAIENENIEMIELLLDHNIETGDAIL--YAIGEENV 109
Query: 282 EDV 290
E V
Sbjct: 110 EAV 112
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 522 LQSQCPLASQSQTVQPMHQSTGGQPSLKLDSYGLHCSG 409
LQ P++SQSQ P+ G QP + + C G
Sbjct: 336 LQLATPMSSQSQQTFPIPSPLGSQPQQQQPMGPIQCQG 373
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 522 LQSQCPLASQSQTVQPMHQSTGGQPSLKLDSYGLHCSG 409
LQ P++SQSQ P+ G QP + + C G
Sbjct: 336 LQLATPMSSQSQQTFPIPSPLGSQPQQQQPMGPIQCQG 373
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 522 LQSQCPLASQSQTVQPMHQSTGGQPSLKLDSYGLHCSG 409
LQ P++SQSQ P+ G QP + + C G
Sbjct: 336 LQLATPMSSQSQQTFPIPSPLGSQPQQQQPMGPIQCQG 373
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 522 LQSQCPLASQSQTVQPMHQSTGGQPSLKLDSYGLHCSG 409
LQ P++SQSQ P+ G QP + + C G
Sbjct: 336 LQLATPMSSQSQQTFPIPSPLGSQPQQQQPMGPIQCQG 373
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,861,078
Number of Sequences: 27780
Number of extensions: 354591
Number of successful extensions: 1143
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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