Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a11
         (274 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    26   0.83 
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    25   2.5  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    24   4.4  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    23   7.8  

>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.2 bits (55), Expect = 0.83
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 274 FFFWSHPPPLRCFHRPTFFSEDRN 203
           FF   H      FHRPTFF    N
Sbjct: 415 FFHCCHGQSYNLFHRPTFFESLNN 438


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 6/29 (20%)
 Frame = -2

Query: 114 FSLIKLV---KITCNFS---IKYIFIYFS 46
           +SLIK+V   ++T   S   +KY+F+YFS
Sbjct: 210 YSLIKVVTYLRVTAKLSEAQLKYVFLYFS 238


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 134 PFACILLQSCVLHAALWYVTNMKIAVLRKKSRPMETAERRRV 259
           PF    +Q+  LH+     TN  +A L +K   +++ E +R+
Sbjct: 234 PFGSATVQTPCLHSVPDAFTNPDVATLYQKFLRLQSLEHQRL 275


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 178 PMVCYKYEDCGPPKKKSADGNSGAEEGGSKK 270
           P    K+ +   P   S D NS  EE  SKK
Sbjct: 27  PFASQKFPENLVPDNSSNDANSQPEEVSSKK 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,264,517
Number of Sequences: 5004
Number of extensions: 24325
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)