Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28a10
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0428 + 3274248-3274847 30 2.0
09_04_0162 + 15245354-15245458,15245558-15245629,15245793-152466... 29 3.5
09_02_0607 - 11183382-11183387,11183481-11183637,11184220-111842... 29 3.5
03_05_0998 - 29574286-29574308,29574400-29574490,29574578-295747... 29 3.5
09_04_0097 - 14573499-14574110,14574977-14575017,14575424-145756... 29 4.6
12_02_0127 + 13961726-13961947,13962050-13962121,13962288-139630... 28 8.1
05_02_0004 - 5528713-5528718,5529039-5529390,5529802-5530339,553... 28 8.1
02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227 28 8.1
>07_01_0428 + 3274248-3274847
Length = 199
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +3
Query: 504 VMEPRIKNSGLWQGRLVKRGRIPKNDAGECWH----WKDLDIGKD 626
V+E + N W+ RL KRG D G+ WH W +L+ +D
Sbjct: 109 VVECQPGNEEEWRRRLEKRGAAVPEDGGDGWHKPKTWTELERLRD 153
>09_04_0162 +
15245354-15245458,15245558-15245629,15245793-15246617,
15247787-15248474,15248805-15248821
Length = 568
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/83 (22%), Positives = 41/83 (49%)
Frame = +3
Query: 432 ENPDENYRVRVVNIVYFLEDDSMTVMEPRIKNSGLWQGRLVKRGRIPKNDAGECWHWKDL 611
ENPD+N+ +NI FLE++S+T ++ + + + + +N+A + ++
Sbjct: 200 ENPDQNFSEEDINI--FLENESVTAVQRGGQEANSAHVPSINKVFADENEAFDFYNGYAY 257
Query: 612 DIGKDICIYGKVFHTVSCDLFTK 680
+G C +H+ D+ T+
Sbjct: 258 MVGFSTC-KASNYHSRKTDIVTR 279
>09_02_0607 -
11183382-11183387,11183481-11183637,11184220-11184284,
11184397-11184469,11184759-11184905,11185515-11185562,
11185637-11185716,11186112-11186439,11186525-11186576,
11187397-11187523,11187613-11187990
Length = 486
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = -3
Query: 601 QCQHSPASFF-GIL-PLFTKRPCHKPEFLILGSM 506
+C + PA+FF GIL PL +R C E +I+GS+
Sbjct: 277 KCLYKPAAFFKGILLPLCQERNCTLREAVIIGSI 310
>03_05_0998 -
29574286-29574308,29574400-29574490,29574578-29574751,
29574831-29574902,29574983-29575051,29575129-29575194,
29575292-29575483,29575589-29575704,29575843-29576023
Length = 327
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -1
Query: 693 FEPFPL*I-DRKRLYETPSRRYKCLYQYRDPSSASIRRRHSLESYLFLPNDLA 538
F+ +P+ + DR+ LY +P+ + Q D S+ +RR ++ ++ L N A
Sbjct: 42 FQAYPMVLEDREGLYRSPNGTFCQNIQLSDDHSSGAKRRKGIDDHIALLNPSA 94
>09_04_0097 -
14573499-14574110,14574977-14575017,14575424-14575616,
14575697-14575837,14575970-14576197,14576297-14576552,
14576866-14577069,14577157-14577245,14577346-14577416,
14577498-14577579,14577653-14577715,14578018-14578155
Length = 705
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -2
Query: 572 WNPTSFYQTTLP*TRILNSGFHDCHRIIFEEVNNIDHSYSIVFIRIFKHWL 420
W+ +Y T + TRI + H E V+ I SY I I F H L
Sbjct: 179 WSTREYYGTGIRATRIKTAPVHASASWYLENVSPILQSYGIAAIAPFSHRL 229
>12_02_0127 +
13961726-13961947,13962050-13962121,13962288-13963058,
13963401-13963573,13963973-13964083,13964114-13964460,
13964627-13964652
Length = 573
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +3
Query: 432 ENPDENYRVRVVNIVYFLEDDSMTVME 512
ENPD+N+ +NI FLE++S+ V++
Sbjct: 239 ENPDQNFSEEDINI--FLENESVAVVQ 263
>05_02_0004 -
5528713-5528718,5529039-5529390,5529802-5530339,
5530354-5531731,5531895-5532015,5534226-5534545
Length = 904
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/83 (21%), Positives = 40/83 (48%)
Frame = +3
Query: 432 ENPDENYRVRVVNIVYFLEDDSMTVMEPRIKNSGLWQGRLVKRGRIPKNDAGECWHWKDL 611
ENPD+N+ +NI FLE++S+ ++ + + + + +N+A + ++
Sbjct: 288 ENPDQNFSEEDINI--FLENESVAAVQRGGQEANSAHAPSINKVFADENEAFDFYNGYAY 345
Query: 612 DIGKDICIYGKVFHTVSCDLFTK 680
+G C +H+ D+ T+
Sbjct: 346 MVGFSTC-KASNYHSRKTDVVTR 367
>02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227
Length = 1000
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2
Query: 620 TNIEILPVPAFAGVILWNPTSFYQTTLP*TRILNSGFHDCHRI 492
T+++ L + + G L P FY LP + L FHDCHR+
Sbjct: 609 TSLKCLTLYGYLGQSL--PNWFYPHNLPSLKSLE--FHDCHRL 647
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,220,863
Number of Sequences: 37544
Number of extensions: 452737
Number of successful extensions: 1071
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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