Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a10
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032624-2|CAA21520.2|  447|Caenorhabditis elegans Hypothetical ...    75   6e-14
Z49936-3|CAD90174.1| 1000|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AY834227-1|AAV91313.1|  984|Caenorhabditis elegans Toll and inte...    30   1.8  
U50308-2|AAG24028.1|  791|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81028-1|CAB02690.1| 1099|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>AL032624-2|CAA21520.2|  447|Caenorhabditis elegans Hypothetical
           protein Y49A10A.1 protein.
          Length = 447

 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 35/97 (36%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
 Frame = +3

Query: 396 LNFTAFFKQPVFENPDENYRVRVVNIVYFLEDDSMTVMEPRIKNSGLWQGRLVKRGRIP- 572
           L+F A+ ++   +  +E +R+R+  I Y L DD++TV EP + N+G   GR+ +R ++P 
Sbjct: 80  LSFDAYAEEDGLD--EEIHRIRIFKINYHLNDDTITVNEPFVDNTGYLHGRIFRRQKVPA 137

Query: 573 KNDAGECW-HWKDLDIGKDICIYGKVFHTVSCDLFTK 680
            N  G+ + HW DL++G DI ++  ++   SCD FT+
Sbjct: 138 HNRIGKPYVHWSDLNVGTDINLFQTIYRITSCDTFTR 174


>Z49936-3|CAD90174.1| 1000|Caenorhabditis elegans Hypothetical
           protein F13B10.1c protein.
          Length = 1000

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
 Frame = +3

Query: 111 RIAMAWGLPKLPGLTFSDPTRTQYHLRSSLRYYQ-GHRFPDTVVRGPGGAPTDVDSNAFA 287
           +IA A  LP +P     D       L +   + +  HR+   +     G  T  D   F 
Sbjct: 31  KIAQAHSLPTVPSEDAKDDDLITPELSTDFDFREIQHRYLMALQNEQDGETTSTDDAFFE 90

Query: 288 LPDDSINYDPSLTYGRVKQPALPAVVP 368
           L DD     PS+    V  P++   +P
Sbjct: 91  LDDDDDLSSPSVPGSPVDPPSISVPLP 117


>AY834227-1|AAV91313.1|  984|Caenorhabditis elegans Toll and
           interleukin 1 receptordomain protein isoform c protein.
          Length = 984

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
 Frame = +3

Query: 111 RIAMAWGLPKLPGLTFSDPTRTQYHLRSSLRYYQ-GHRFPDTVVRGPGGAPTDVDSNAFA 287
           +IA A  LP +P     D       L +   + +  HR+   +     G  T  D   F 
Sbjct: 31  KIAQAHSLPTVPSEDAKDDDLITPELSTDFDFREIQHRYLMALQNEQDGETTSTDDAFFE 90

Query: 288 LPDDSINYDPSLTYGRVKQPALPAVVP 368
           L DD     PS+    V  P++   +P
Sbjct: 91  LDDDDDLSSPSVPGSPVDPPSISVPLP 117


>U50308-2|AAG24028.1|  791|Caenorhabditis elegans Hypothetical
           protein F07C3.3 protein.
          Length = 791

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 476 NNIDHSYSIVFIRIFKHWLFEKCRE 402
           N  DH Y   ++ ++++W +E CR+
Sbjct: 438 NPADHYYRAYYLAVYENWKYEACRD 462


>Z81028-1|CAB02690.1| 1099|Caenorhabditis elegans Hypothetical
           protein B0365.1 protein.
          Length = 1099

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 381 YDKRCLNFTAFFKQPVFENPDENYRVRVVNIVYFLEDDSMTVME 512
           Y +RC +   F++Q   +  D   + R V++   L+D++M++ E
Sbjct: 123 YSERCRDVIMFYEQGGVDIGDVEEKARSVHVPVQLDDNAMSISE 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,245,775
Number of Sequences: 27780
Number of extensions: 395615
Number of successful extensions: 1012
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)