Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a07
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    25   3.8  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    24   5.0  
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    24   5.0  
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch...    24   6.6  

>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 268 IIIIS*VQCQKEGVLYNTIFKDFL 197
           I+++    C K  VL N + KDFL
Sbjct: 29  IVVVGSQSCGKSSVLENIVGKDFL 52


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 145 IFFMFTYIYPVLYSGKLQLKTLLATIKNKLFTK 47
           +   F Y   +L S  LQL   +A I+  +FT+
Sbjct: 532 VIIQFLYAIAILLSTPLQLFPAIAIIEQGIFTR 564


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 271 DIIIIS*VQCQKEGVLYNTIFKDFLCYY 188
           D++ +S V C KEG+++     D+L ++
Sbjct: 218 DMLKLSLVGCVKEGIVHPVTVVDYLLFH 245


>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 207

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 225 YIIQFLKIFFVTTTIR 178
           YIIQ L+ FF  TT+R
Sbjct: 124 YIIQGLEYFFFDTTVR 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,223,736
Number of Sequences: 5004
Number of extensions: 22450
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)