Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a07
         (322 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0510 - 3794793-3795047,3796005-3796295,3796850-3796906,379...    29   1.1  
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986...    26   5.7  

>07_01_0510 -
           3794793-3795047,3796005-3796295,3796850-3796906,
           3797021-3797055,3797132-3797172,3798020-3798519
          Length = 392

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 91  LKTLLATIKNKLFTKHYNFLIHSAD-GQSSS 2
           L+T+LA +  +L    +NF+IHSA  G SSS
Sbjct: 316 LRTMLAKLSKQLNDPPFNFMIHSAPFGVSSS 346


>01_01_1220 +
           9862195-9862281,9862427-9862646,9862764-9862916,
           9863016-9863674,9863749-9863852,9863950-9864192,
           9864262-9864376,9864696-9864909,9864995-9865511,
           9866439-9866448,9867363-9867551,9867755-9868084,
           9868639-9868872,9869303-9869743
          Length = 1171

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -1

Query: 259 IS*VQCQKEGVLYNTIFKD---FLCYYHYSQHII 167
           IS ++    G++++T  +D   FLCYY Y + ++
Sbjct: 627 ISPLRALSPGLVFDTTTRDYLNFLCYYGYKEQLV 660


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,424,928
Number of Sequences: 37544
Number of extensions: 98637
Number of successful extensions: 121
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)