Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a03
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    28   1.6  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.1  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    27   3.8  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    27   3.8  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.6  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   6.6  
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    25   8.7  

>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 258 GSILCARILLGSGCSIADRESGAP*RFHRLVG*SV-CTFSALGSFLYVIPVDFGYC 422
           G I+   + LG G S+A+    +      ++G SV CT  ALG     +PV   +C
Sbjct: 29  GGIIGTGLFLGIGSSLAESGPASLLISFSVLGVSVYCTMLALGEMSVYMPVAGSFC 84


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 535 PVARPTPGAAPRWQPGNCLTL 473
           P ARPT      WQPGN  T+
Sbjct: 73  PPARPTSQRPNSWQPGNASTM 93


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 271 HNIEPAIEPGPAVRLQANRSNIHLKPSRTVSLSPNNV 161
           HNI P+  P P   +  NR  +  K S T+ ++ N +
Sbjct: 219 HNIYPSTSPNPTSPVTLNRLPLGKKDSYTLVIASNKL 255


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 271 HNIEPAIEPGPAVRLQANRSNIHLKPSRTVSLSPNNV 161
           HNI P+  P P   +  NR  +  K S T+ ++ N +
Sbjct: 219 HNIYPSTSPNPTSPVTLNRLPLGKKDSYTLVIASNKL 255


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -3

Query: 743 FSTKRSLRSRFNRILK--KLRSSSTVLSKKQLEGGPLLPVARHRC*RNNKYKSRLYSD 576
           FS+ +S R  F R  K  KL +   ++ +KQL       + RH   +N+   ++ Y +
Sbjct: 23  FSSNKSQRLVFGRKHKTAKLEAPRALIKRKQLSHSTSSDITRHSNAKNSGKDTQFYEE 80


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 559 SSEWSPTVPVARPTPGAAP 503
           +S+W P +P   P PG +P
Sbjct: 757 NSKWMPEMPTRMPPPGPSP 775


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = +3

Query: 492 GCQRGAA--PGVGRATGTVGDH 551
           GC+ G    PG+G   GT GDH
Sbjct: 405 GCEHGVFVYPGMGTIDGTRGDH 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,146
Number of Sequences: 5004
Number of extensions: 68344
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)