Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a03
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81140-2|CAB03486.1|  581|Caenorhabditis elegans Hypothetical pr...    34   0.093
X70835-1|CAA50183.1|  581|Caenorhabditis elegans Cytoplasmic int...    34   0.093
Z80216-11|CAN99667.1|  984|Caenorhabditis elegans Hypothetical p...    30   2.0  
Z80216-10|CAB02286.4|  949|Caenorhabditis elegans Hypothetical p...    30   2.0  
AL023823-2|CAN99714.1|  984|Caenorhabditis elegans Hypothetical ...    30   2.0  
AL023823-1|CAA19441.4|  949|Caenorhabditis elegans Hypothetical ...    30   2.0  
AL132904-24|CAC35834.2|  459|Caenorhabditis elegans Hypothetical...    28   6.1  
AL021177-1|CAA15979.1|   83|Caenorhabditis elegans Hypothetical ...    28   6.1  
U58727-4|AAB00584.2|  148|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z81140-2|CAB03486.1|  581|Caenorhabditis elegans Hypothetical
           protein W10G6.3 protein.
          Length = 581

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = +1

Query: 448 RKLMERRIAKLNNYLVASVERLRVWDAQQEQLETTLKMVQ 567
           R+  ++ I +LN+ L + +E++R  DAQ  +L+  LKM+Q
Sbjct: 68  REREKKEIMELNDRLASYIEKVRFLDAQNRKLDADLKMLQ 107


>X70835-1|CAA50183.1|  581|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 581

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = +1

Query: 448 RKLMERRIAKLNNYLVASVERLRVWDAQQEQLETTLKMVQ 567
           R+  ++ I +LN+ L + +E++R  DAQ  +L+  LKM+Q
Sbjct: 68  REREKKEIMELNDRLASYIEKVRFLDAQNRKLDADLKMLQ 107


>Z80216-11|CAN99667.1|  984|Caenorhabditis elegans Hypothetical
           protein F10G8.8b protein.
          Length = 984

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 322 PLSRSAMEHPLPSNIRAHNIEPAIEPGPAVRLQANRSNIH 203
           P+S S  E P P++       P I   P  +L  + SN+H
Sbjct: 250 PVSPSCQEEPTPTSTTNSATTPTISTTPTQKLNIDMSNVH 289


>Z80216-10|CAB02286.4|  949|Caenorhabditis elegans Hypothetical
           protein F10G8.8a protein.
          Length = 949

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 322 PLSRSAMEHPLPSNIRAHNIEPAIEPGPAVRLQANRSNIH 203
           P+S S  E P P++       P I   P  +L  + SN+H
Sbjct: 250 PVSPSCQEEPTPTSTTNSATTPTISTTPTQKLNIDMSNVH 289


>AL023823-2|CAN99714.1|  984|Caenorhabditis elegans Hypothetical
           protein F10G8.8b protein.
          Length = 984

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 322 PLSRSAMEHPLPSNIRAHNIEPAIEPGPAVRLQANRSNIH 203
           P+S S  E P P++       P I   P  +L  + SN+H
Sbjct: 250 PVSPSCQEEPTPTSTTNSATTPTISTTPTQKLNIDMSNVH 289


>AL023823-1|CAA19441.4|  949|Caenorhabditis elegans Hypothetical
           protein F10G8.8a protein.
          Length = 949

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 322 PLSRSAMEHPLPSNIRAHNIEPAIEPGPAVRLQANRSNIH 203
           P+S S  E P P++       P I   P  +L  + SN+H
Sbjct: 250 PVSPSCQEEPTPTSTTNSATTPTISTTPTQKLNIDMSNVH 289


>AL132904-24|CAC35834.2|  459|Caenorhabditis elegans Hypothetical
           protein Y111B2A.4 protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +1

Query: 523 DAQQEQLETTLKMVQNATSEYNXXXXXXXRQHRCLATGNN 642
           DAQ E L+T  K + NA +E N        QH      NN
Sbjct: 289 DAQIEDLKTQNKELANAYTELNEEFEGFKEQHTATQNANN 328


>AL021177-1|CAA15979.1|   83|Caenorhabditis elegans Hypothetical
           protein Y1A5A.2 protein.
          Length = 83

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 590 YFYICCCVSIGVSP-PATTGRLPTASST 670
           Y + CCC+S+G S  P  + R+P    T
Sbjct: 45  YTHTCCCISLGASAHPTRSPRVPRKQHT 72


>U58727-4|AAB00584.2|  148|Caenorhabditis elegans Hypothetical
           protein D1005.5 protein.
          Length = 148

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 675 CFVEEAVGRRPVVAGGETPMLTQQQI*K*IVFGRGILYHLQSGLQLFLLRV 523
           C+  +   R  +V   + P + Q ++ K + F  G LYH+     L  LRV
Sbjct: 59  CYQRKKRSRVVIVLNLKIPKVHQNRVKKCVSFNNGSLYHVSETESLRTLRV 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,893,691
Number of Sequences: 27780
Number of extensions: 415214
Number of successful extensions: 1145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)