Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a02
         (174 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    19   5.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   7.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     19   7.3  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    18   9.6  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    18   9.6  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +3

Query: 3   ITFSFGEQGVF 35
           + F +GE+G+F
Sbjct: 249 LNFQWGEEGIF 259


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 38  VRLCFLVWVTQSSGFRENI 94
           VRLCF V++  S   + N+
Sbjct: 186 VRLCFQVFLEGSQKRKFNV 204


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 38  VRLCFLVWVTQSSGFRENI 94
           VRLCF V++  S   + N+
Sbjct: 186 VRLCFQVFLEGSQKRKFNV 204


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 94  NIFTKS*GLCDPHEETQP 41
           N +TK+  +  P EET P
Sbjct: 55  NTYTKTFKMNVPFEETLP 72


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 94  NIFTKS*GLCDPHEETQP 41
           N +TK+  +  P EET P
Sbjct: 57  NTYTKTFKMNVPFEETLP 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,502
Number of Sequences: 438
Number of extensions: 426
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 37
effective length of database: 130,137
effective search space used:  2602740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)