Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a01
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O74498 Cluster: UBA/UAS domain protein Ucp10; n=1; Schi...    33   6.7  
UniRef50_Q9YVU9 Cluster: ORF MSV143 putative poly(A) polymerase ...    33   8.8  
UniRef50_Q8H931 Cluster: Putative UDP-glucose 4-epimerase; n=5; ...    33   8.8  

>UniRef50_O74498 Cluster: UBA/UAS domain protein Ucp10; n=1;
           Schizosaccharomyces pombe|Rep: UBA/UAS domain protein
           Ucp10 - Schizosaccharomyces pombe (Fission yeast)
          Length = 427

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 25/85 (29%), Positives = 38/85 (44%)
 Frame = +3

Query: 180 RASERTHTLFFPI*SLVIYSVNFFGSLVY*LVNHGCLVSNLDLVNLFNK*KSYVPTLITC 359
           R S + H   FP   LV+YS      LV     HGCL S+  + NL N    ++P+L   
Sbjct: 192 RGSRQFHCTKFPSAVLVMYSPQL-SELVVAAQLHGCLDSSSIITNLTNALAKHLPSLERF 250

Query: 360 NTEERSNLGMLK*NLRKVHYYDTSL 434
            +E  +     +   ++ + Y  SL
Sbjct: 251 RSEREAREAARELRRQQDNAYQASL 275


>UniRef50_Q9YVU9 Cluster: ORF MSV143 putative poly(A) polymerase
           large subunit PAP-L homolog (Vaccinia E1L), similar to
           SW:P33809; n=1; Melanoplus sanguinipes
           entomopoxvirus|Rep: ORF MSV143 putative poly(A)
           polymerase large subunit PAP-L homolog (Vaccinia E1L),
           similar to SW:P33809 - Melanoplus sanguinipes
           entomopoxvirus (MsEPV)
          Length = 571

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = -3

Query: 322 LNKLTKSRFETRHP*FTN**TNEPKKLTE*ITN-D*IGKKSVCVRSDARLEFTGYKKLNE 146
           L+K+ K RF  ++  F N    E    ++ I+  D I    VC +S   ++    KK+N 
Sbjct: 377 LSKI-KGRFSMKYGSFLNEIFFETSISSDKISKMDIIAGNVVCEKSPYVIDENTMKKINV 435

Query: 145 TIREIVLYYDNTIHYRLLTN*RDTKQTTNKYMKIQ 41
           T  EI +Y D T  Y + TN      TT+ Y+ ++
Sbjct: 436 TNDEIDIYIDTTKKYLIFTN-----LTTSTYLYVE 465


>UniRef50_Q8H931 Cluster: Putative UDP-glucose 4-epimerase; n=5;
           Oryza sativa|Rep: Putative UDP-glucose 4-epimerase -
           Oryza sativa subsp. japonica (Rice)
          Length = 408

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = -3

Query: 193 RSDARLEFTGYKKLNETIREIVLYYDNTIH 104
           R DA + F G K + E++++ +LYYDN+++
Sbjct: 87  RFDAVVHFAGLKAVGESVQKPLLYYDNSVN 116


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,931,148
Number of Sequences: 1657284
Number of extensions: 11202786
Number of successful extensions: 19405
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19398
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)