Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a01
         (696 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    25   0.59 
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   7.3  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   7.3  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   7.3  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   7.3  

>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 7/24 (29%), Positives = 18/24 (75%)
 Frame = +3

Query: 207 FFPI*SLVIYSVNFFGSLVY*LVN 278
           ++P+ ++  Y +NFFGS+ + +++
Sbjct: 113 YYPVATMSFYVLNFFGSIQFIIIS 136



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 623 IH*YYK*EFLSVCLLRFHAQITGLILTKHKM*IVSTRDF 507
           +H YY    +S  +L F   I  +I++KH + I+    F
Sbjct: 110 VHFYYPVATMSFYVLNFFGSIQFIIISKHWVTIMKEWSF 148


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 564 NHWTDFNETQDVNRFNSGFLPTT 496
           N W+D N+     R N GF+  T
Sbjct: 402 NWWSDGNQQIAFGRGNKGFVAFT 424


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 130 LFLVLFRLIFYIQ*TPVVRRSGHTHFFFLS 219
           +   L +   YIQ T ++ R+ H    FLS
Sbjct: 652 VIFALHKFRIYIQVTKIIIRTDHQALKFLS 681


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 564 NHWTDFNETQDVNRFNSGFLPTT 496
           N W+D N+     R N GF+  T
Sbjct: 403 NWWSDGNQQIAFGRGNKGFVAFT 425


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 564 NHWTDFNETQDVNRFNSGFLPTT 496
           N W+D N+     R N GF+  T
Sbjct: 403 NWWSDGNQQIAFGRGNKGFVAFT 425


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,605
Number of Sequences: 336
Number of extensions: 3217
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)