Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a01
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    33   0.039
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   4.5  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    26   5.9  

>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 33.1 bits (72), Expect = 0.039
 Identities = 25/85 (29%), Positives = 38/85 (44%)
 Frame = +3

Query: 180 RASERTHTLFFPI*SLVIYSVNFFGSLVY*LVNHGCLVSNLDLVNLFNK*KSYVPTLITC 359
           R S + H   FP   LV+YS      LV     HGCL S+  + NL N    ++P+L   
Sbjct: 192 RGSRQFHCTKFPSAVLVMYSPQL-SELVVAAQLHGCLDSSSIITNLTNALAKHLPSLERF 250

Query: 360 NTEERSNLGMLK*NLRKVHYYDTSL 434
            +E  +     +   ++ + Y  SL
Sbjct: 251 RSEREAREAARELRRQQDNAYQASL 275


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 194 PLRRTTGVYWI*KIKRNNTRNSSILRQHDTLQIINKLTRHKTND 63
           PLR T+  Y++    +NN  N+S L Q + L+ + +    K +D
Sbjct: 266 PLRETSNPYFLRDFLKNNA-NTSTLGQSEQLRYLEEALSLKLSD 308


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 55  IC*SFVLCLVNLLIICSVSCCRNIELFLVLFRLIFYIQ 168
           +C  F   L+ +L ICS+ C   +  FLV F L   I+
Sbjct: 1   MCPLFKTYLLYILKICSIPCLAYVVNFLVCFVLFTNIK 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,040
Number of Sequences: 5004
Number of extensions: 52809
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)