Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a01
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0471 - 17563245-17563488,17563564-17563655,17563941-175640...    32   0.38 
05_07_0344 + 29411767-29411961,29412692-29412741,29413295-294134...    30   1.5  
09_02_0435 - 9384225-9384412,9385084-9385133,9385209-9385274,938...    30   2.0  
09_06_0023 - 20299435-20299528,20299666-20299757,20299873-202999...    28   8.1  
04_01_0125 - 1317328-1318049,1318061-1319035,1320994-1321143,132...    28   8.1  

>08_02_0471 -
           17563245-17563488,17563564-17563655,17563941-17564023,
           17564418-17564499,17565234-17565461,17565553-17565654,
           17565818-17565953,17566080-17566129,17566465-17566572,
           17568702-17568911
          Length = 444

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 193 RSDARLEFTGYKKLNETIREIVLYYDNTIH 104
           R DA + F G K + E++++ +LYYDN ++
Sbjct: 123 RFDAVVHFAGLKAVGESVQKPLLYYDNNVN 152


>05_07_0344 +
           29411767-29411961,29412692-29412741,29413295-29413430,
           29413931-29414032,29414153-29414380,29414460-29414544,
           29414648-29414730,29414854-29414945,29415048-29415141
          Length = 354

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 193 RSDARLEFTGYKKLNETIREIVLYYDNTI 107
           R +A + F G K + E++++ +LYYDN +
Sbjct: 82  RFEAVIHFAGLKAVGESVQKPLLYYDNNL 110


>09_02_0435 -
           9384225-9384412,9385084-9385133,9385209-9385274,
           9385360-9385451,9385893-9385975,9386181-9386259,
           9386888-9387115,9387196-9387297,9387719-9387854,
           9387984-9388033,9389391-9389618
          Length = 433

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 193 RSDARLEFTGYKKLNETIREIVLYYDNTI 107
           R DA + F G K + E++++ +LYYD+ +
Sbjct: 93  RFDAVVHFAGLKAVGESVQKPLLYYDHNV 121


>09_06_0023 -
           20299435-20299528,20299666-20299757,20299873-20299955,
           20300066-20300147,20300235-20300462,20300646-20300747,
           20300834-20300969,20301105-20301514
          Length = 408

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 229 TND*IGKKSVCVRSDARLEFTGYKKLNETIREIVLYYDNTI 107
           + D + K     R DA + F G K + E++    +YY+N +
Sbjct: 125 SKDDMEKVFAAKRYDAVIHFAGLKAVGESVAHPQMYYENNV 165


>04_01_0125 -
           1317328-1318049,1318061-1319035,1320994-1321143,
           1322242-1322546,1323447-1323565
          Length = 756

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 190 SGHTHFFFLSNRW*FIRLIFSVRWS 264
           + H HF  LSN W F   ++SV WS
Sbjct: 502 NNHIHFIDLSNNW-FSGCLYSVFWS 525


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,918,619
Number of Sequences: 37544
Number of extensions: 266390
Number of successful extensions: 390
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)