Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28a01
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 103 SVSCCRNIELFLVLFRLIFYIQ*TPVVRRSG 195
           +V  C  I   + +  L+F+ + TPVVR SG
Sbjct: 520 AVISCLGIVATMAVACLLFHHRDTPVVRASG 550


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 103 SVSCCRNIELFLVLFRLIFYIQ*TPVVRRSG 195
           +V  C  I   + +  L+F+ + TPVVR SG
Sbjct: 610 AVISCLGIVATMAVACLLFHHRDTPVVRASG 640


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 100 CSVSCCRNIELFLVLFRLIFYI 165
           C +SC  NI   ++L   +FY+
Sbjct: 105 CVLSCWTNIYYIIILAWALFYL 126



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/25 (28%), Positives = 18/25 (72%)
 Frame = +1

Query: 91  LIICSVSCCRNIELFLVLFRLIFYI 165
           LI+C+V+ C ++   +V+F ++ ++
Sbjct: 316 LIVCTVNSCTSMLSGIVIFSVVGFM 340


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 100 CSVSCCRNIELFLVLFRLIFYI 165
           C +SC  NI   ++L   +FY+
Sbjct: 158 CVLSCWTNIYYIIILAWALFYL 179



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/25 (28%), Positives = 18/25 (72%)
 Frame = +1

Query: 91  LIICSVSCCRNIELFLVLFRLIFYI 165
           LI+C+V+ C ++   +V+F ++ ++
Sbjct: 369 LIVCTVNSCTSMLSGIVIFSVVGFM 393


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,105
Number of Sequences: 438
Number of extensions: 3678
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)