Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27p10
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.5  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              22   4.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.7  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   6.2  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   6.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = -3

Query: 208 LVHLISHSLHFHL--PPIKGPEAPIPISFLSQTFLIVVLEHS 89
           +V      LH HL  PP + P +    S   QT  ++   HS
Sbjct: 663 IVQHTQSQLHLHLTSPPARSPSSQAQASQCPQTASLLSSTHS 704


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +1

Query: 172 NENVASEILDEPDKEEEFDEISPKVFSLKDVNEPLTLETLNNTIYELGVIN 324
           NE+V+ EI      E E +++  +  ++ D N  L +  +   I +   IN
Sbjct: 80  NEHVSREIAKIFLNENEINQLITECSAISDTNVHLKITKIFQCITKFKTIN 130


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -2

Query: 545 FVGRIEVHTIFCNPHSFGACSNKGFRGL 462
           F+GR  +  ++ N     +  N+ F GL
Sbjct: 814 FIGRKNMRVLYVNGSGIESIQNRTFNGL 841


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 372 ISRKLLHEQSKRTLTTCLCGMF*ATVLISF*TSETFVATSAKR 500
           IS + L E+     T   CG+     +ISF   +T +  + KR
Sbjct: 637 ISMRHLKEEVSSIETNYECGLRFEDPMISFQPGDTIICINIKR 679


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +3

Query: 93  CSKTTIRNVWDRK 131
           C KT+ +++WD++
Sbjct: 81  CRKTSFKDLWDKR 93


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +3

Query: 93  CSKTTIRNVWDRK 131
           C KT+ +++WD++
Sbjct: 81  CRKTSFKDLWDKR 93


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 169 PPIKGPEAPIPISFLSQTFLIVV 101
           PP + P   +P+S++S T   V+
Sbjct: 822 PPQQNPYMFLPVSYMSTTMAGVI 844


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,116
Number of Sequences: 438
Number of extensions: 3489
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)