Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte27o08
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 44 2e-05
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 43 3e-05
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 34 0.013
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 34 0.018
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 34 0.018
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc... 32 0.054
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 6.2
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 25 6.2
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 25 6.2
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 44.0 bits (99), Expect = 2e-05
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +3
Query: 381 EILDAAGAQLKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLILSASRR 560
EI+D +K + + AGY + ARGIQ+++ P + A A+V + L+L A R
Sbjct: 72 EIIDNLPPSVKFICHLGAGYETVDVAACTARGIQVSHVPKAVDDATADVGIFLMLGALRG 131
Query: 561 FTENL 575
F + +
Sbjct: 132 FNQGI 136
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 43.2 bits (97), Expect = 3e-05
Identities = 24/88 (27%), Positives = 49/88 (55%)
Frame = +3
Query: 297 STLGREEILKLIPGCSALVWISNLPITNEILDAAGAQLKIVSTVSAGYNHCNPEELRARG 476
+++ +++++ I G A+ S +T +L+AA + L ++ G N + + RG
Sbjct: 84 TSMSEDDLVEKIKGVHAIGIRSKTRLTRRVLEAADS-LIVIGCFCIGTNQVDLDFAAERG 142
Query: 477 IQLTNTPNVLSPAVAEVAVGLILSASRR 560
I + N+P S +VAE+ +G I+S +R+
Sbjct: 143 IAVFNSPYANSRSVAELVIGYIISLARQ 170
>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 34.3 bits (75), Expect = 0.013
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +3
Query: 411 KIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLILSASRRFTENLDQVR 587
K+++ AG+N+ + + GI + P AVAE +GL+LS +R+ +VR
Sbjct: 70 KLIALRCAGFNNVDLKAAADNGITVVRVPAYSPYAVAEYTIGLLLSLNRKIHRAYVRVR 128
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 33.9 bits (74), Expect = 0.018
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +3
Query: 408 LKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLILSASRRFTENLDQVR 587
+K+V+ GYN+ N + I + + P+ AV+E VGL+LS +R+ +VR
Sbjct: 69 VKLVALRCGGYNNVNLKAASEYKITVVHVPSYSPFAVSEFTVGLLLSLNRKIHRAYVRVR 128
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 33.9 bits (74), Expect = 0.018
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +3
Query: 369 PITNEILDAAGAQLKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLILS 548
P T E+L K+ T +AGYN+ + + G+ + NTPN + A + + L +
Sbjct: 71 PFTEEMLGPLLPTCKLFVTGAAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMC 130
Query: 549 ASRRFTENLDQVR 587
R E +R
Sbjct: 131 TLRGAREAEQSLR 143
>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 32.3 bits (70), Expect = 0.054
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 375 TNEILDAAGAQLKIVSTVSAGYNHCNPE 458
T E+L A ++LK++ T + NHCNPE
Sbjct: 125 TLELLHAKESELKLLKTQLSNLNHCNPE 152
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.4 bits (53), Expect = 6.2
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 201 VSSNDYPPTALKLLEDHFTVLQSRYLNFGQEGSTLGREEILKLIPGCSA 347
+SSND P T L + + F+ LQ +G E G + LI C+A
Sbjct: 929 LSSNDQPSTGLYPILNMFSRLQYAQ-PYGNENEWTGLSQFEPLIFKCTA 976
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 25.4 bits (53), Expect = 6.2
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +3
Query: 384 ILDAAGAQLKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLILSASRRF 563
+L A IVS + G + C + + + NT LSP AE I+S+ F
Sbjct: 55 LLKARRMTATIVSNHNVGCSCCYFRQYSTKQFRDLNTSEALSPCKAEPIPYKIMSSMSNF 114
Query: 564 TE 569
++
Sbjct: 115 SD 116
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 411 KIVSTVSAG-YNHCNPEELRARGIQLTNTPNVLS 509
KI+S + G N +L ARGI + NT NV++
Sbjct: 478 KIISRFATGDLNLLVCSDLMARGIDVANTQNVIN 511
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,086
Number of Sequences: 5004
Number of extensions: 46974
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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