Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27o08
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83219-1|CAB05694.1|  322|Caenorhabditis elegans Hypothetical pr...    48   7e-06
AF101318-2|AAK68599.1|  331|Caenorhabditis elegans Seven tm rece...    29   2.4  
U40952-12|AAA81745.1|  297|Caenorhabditis elegans Hypothetical p...    28   4.3  
AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical ...    27   7.5  

>Z83219-1|CAB05694.1|  322|Caenorhabditis elegans Hypothetical
           protein C31C9.2 protein.
          Length = 322

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 28/83 (33%), Positives = 44/83 (53%)
 Frame = +3

Query: 309 REEILKLIPGCSALVWISNLPITNEILDAAGAQLKIVSTVSAGYNHCNPEELRARGIQLT 488
           ++E+L  +P   A++  S   IT E+L A+  +LK+V     G ++ +     A  I + 
Sbjct: 37  KDELLVTLPQHDAVIVRSATKITAELLAASAGKLKLVGRAGTGVDNIDVPAASANKILVM 96

Query: 489 NTPNVLSPAVAEVAVGLILSASR 557
           NTP   S + AE+   LILS SR
Sbjct: 97  NTPQANSRSAAELTCTLILSLSR 119


>AF101318-2|AAK68599.1|  331|Caenorhabditis elegans Seven tm
           receptor protein 66 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +3

Query: 45  TANTYLSMLIYKKVLCRFPAMITRFTQLYIGLLVAIPCLATNGTMTKNLKVLVSSNDY 218
           T  +++S+L   + LC F +  TRF + + G L  +  L         +K L + NDY
Sbjct: 100 TTFSFISVLFIYRYLCLFDSSKTRFFEGFKGGLWMLYPLLPGICYASTIKYLCAPNDY 157


>U40952-12|AAA81745.1|  297|Caenorhabditis elegans Hypothetical
           protein C03B1.1 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 243 EDHFTVLQSRYLNFGQEGSTLGREEILKLIPGCSALVWISNL 368
           ED +TV    + N G + STL  ++I  +   C A   ++N+
Sbjct: 190 EDQYTVFDQLFDNLGSDASTLMEQQIELMRNYCQAKAELTNM 231


>AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical
           protein C13A2.6 protein.
          Length = 537

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
 Frame = +3

Query: 54  TYLSMLIYKKVLC--RFPAMITRFTQLYIGLLVAIPCLATNGTMTKNLKVLVSSND---Y 218
           TY  +   +K++   +FP +    + L+ G+L     + ++ T+TK  + + +S     Y
Sbjct: 20  TYTILNSNEKIISDGKFPILTLIISILFCGILYKYEIMGSSATITKIFENITNSPSPPVY 79

Query: 219 PPTALKLLEDHFTVLQSRYLNFGQEGSTLGREEILKLIPGCSALVWISNLPITNEILDAA 398
            P++  L   H  ++ + Y        +LG+  +       + +V   N P+ N +    
Sbjct: 80  DPSSHPLPASHVYIVSAYYY---PNSKSLGKNAV-----ALNMVVDSKNFPVDNVVYSVI 131

Query: 399 GA 404
           G+
Sbjct: 132 GS 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,080,610
Number of Sequences: 27780
Number of extensions: 266996
Number of successful extensions: 793
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)