Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27m09
         (472 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   2.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   3.8  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   5.0  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   5.0  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   5.0  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   5.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.8  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 150 LHKHKNIFDFFTEITITNY 94
           LHK KNI D++  +  T++
Sbjct: 281 LHKMKNIIDYYLVLENTDH 299


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 449 TKITKSSIL*TAGLLSQLEESSSVYR 372
           T +TK     TA  ++Q++E++ VY+
Sbjct: 210 TYVTKEVATGTASEITQIQEATLVYK 235


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 263 FVSIGASARHFRYANPP 313
           FVSI      FRY  PP
Sbjct: 365 FVSIQEQIPRFRYIGPP 381


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 263 FVSIGASARHFRYANPP 313
           FVSI      FRY  PP
Sbjct: 365 FVSIQEQIPRFRYIGPP 381


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 263 FVSIGASARHFRYANPP 313
           FVSI      FRY  PP
Sbjct: 365 FVSIQEQIPRFRYIGPP 381


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 263 FVSIGASARHFRYANPP 313
           FVSI      FRY  PP
Sbjct: 354 FVSIQEQIPRFRYIGPP 370


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 147 HKHKNIFDFFTEITITNYPIVKIQYRYKTI 58
           + H+  +  F  I +  +P+V I Y Y +I
Sbjct: 198 YTHEITYSLFGMIMMYWFPLVVIIYTYTSI 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,422
Number of Sequences: 438
Number of extensions: 2548
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)