Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27m06
         (419 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   9.9  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    20   9.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   9.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 117 TLFKNVILIIKVLRK 161
           TLF NV++I+ V+R+
Sbjct: 200 TLFGNVLVILAVVRE 214


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = -3

Query: 246 SIILPKST*HRVVFVQAFLSHTVWCFL 166
           ++I+P +  + V+FV  F+ + + C +
Sbjct: 31  TLIVPITLTYVVIFVTGFVGNIITCIV 57


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 5/18 (27%), Positives = 11/18 (61%)
 Frame = +3

Query: 81  WILAKLSFDAYSTLFKNV 134
           W +  ++FD Y+ + K +
Sbjct: 141 WTMTMIAFDRYNVIVKGL 158


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 5/18 (27%), Positives = 11/18 (61%)
 Frame = +3

Query: 81  WILAKLSFDAYSTLFKNV 134
           W +  ++FD Y+ + K +
Sbjct: 107 WTMTMIAFDRYNVIVKGL 124


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 5/18 (27%), Positives = 11/18 (61%)
 Frame = +3

Query: 81  WILAKLSFDAYSTLFKNV 134
           W +  ++FD Y+ + K +
Sbjct: 17  WTMTMIAFDRYNVIVKGL 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,174
Number of Sequences: 438
Number of extensions: 2470
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)