Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27m02
         (431 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   5.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.8  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 347 EFIKEDSIIESREILKGNEKR 409
           +FIK   +++  +I +GN K+
Sbjct: 50  DFIKMQELLQEEDISEGNIKK 70


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 161  WVL*VMRGYLKTQLLHYNYI 102
            W +  M+G  K++L HY+ +
Sbjct: 1020 WKIWPMKGEEKSRLFHYSVV 1039


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 203 TNLKEQTFMHKILNLLPEKFNTFKSIWNNIDVEKKNLDEL 322
           T L+E+ ++H +       F T   +W + +   K  DEL
Sbjct: 362 TQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDEL 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,410
Number of Sequences: 438
Number of extensions: 2249
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)