Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27m01
         (709 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK093126-1|BAC04065.1|  228|Homo sapiens protein ( Homo sapiens ...    33   1.3  
BC041709-1|AAH41709.1|  639|Homo sapiens adult retina protein pr...    30   7.1  
AY139008-1|AAN28956.1|  639|Homo sapiens adult retina protein pr...    30   7.1  
BC029221-1|AAH29221.2|  288|Homo sapiens transmembrane and coile...    30   9.3  

>AK093126-1|BAC04065.1|  228|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35807 fis, clone TESTI2006008. ).
          Length = 228

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 24/110 (21%), Positives = 53/110 (48%)
 Frame = +1

Query: 76  RIKATEERLIEKNSKATTETKIFGAPVVRHTRDVFEEDALAEFSKEENEQIDQLTQLNGL 255
           RI    ++L+ K  +   + +   + +++ TRD+ E++   + ++   E+   L +L   
Sbjct: 26  RIDEANQKLLLKIQEREDKIQRLESEIIQ-TRDLVEDEEWEKENRTTMERERALQELEEE 84

Query: 256 KMRYYYKYNPMIIPVPVQQTRLTRGSISNVTTTKNSLNNSTEKTKVLIQR 405
             R   K   ++  +   Q +LTR S       ++S + + E+TKV +Q+
Sbjct: 85  TARLERKNKTLVHSITELQQKLTRKSQKITNCEQSSPDGALEETKVKLQQ 134


>BC041709-1|AAH41709.1|  639|Homo sapiens adult retina protein
           protein.
          Length = 639

 Score = 30.3 bits (65), Expect = 7.1
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +1

Query: 172 DVFEEDALAEFSKEENEQIDQLTQLNGLKMRYYYKYNPMIIPVPVQQTRLTRGSISNVTT 351
           D F E      S E+ +++  ++     K RY+++Y+  +   P QQ R+ R S  N  T
Sbjct: 402 DTFSEPGYENDSVEDLKEVTSISSRKRGKRRYFWEYSEQL--TPSQQERMLRPSEWNRDT 459

Query: 352 TKNSL 366
             +++
Sbjct: 460 LPSNM 464


>AY139008-1|AAN28956.1|  639|Homo sapiens adult retina protein
           protein.
          Length = 639

 Score = 30.3 bits (65), Expect = 7.1
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +1

Query: 172 DVFEEDALAEFSKEENEQIDQLTQLNGLKMRYYYKYNPMIIPVPVQQTRLTRGSISNVTT 351
           D F E      S E+ +++  ++     K RY+++Y+  +   P QQ R+ R S  N  T
Sbjct: 402 DTFSEPGYENDSVEDLKEVTSISSRKRGKRRYFWEYSEQL--TPSQQERMLRPSEWNRDT 459

Query: 352 TKNSL 366
             +++
Sbjct: 460 LPSNM 464


>BC029221-1|AAH29221.2|  288|Homo sapiens transmembrane and
           coiled-coil domains 5 protein.
          Length = 288

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 23/110 (20%), Positives = 52/110 (47%)
 Frame = +1

Query: 76  RIKATEERLIEKNSKATTETKIFGAPVVRHTRDVFEEDALAEFSKEENEQIDQLTQLNGL 255
           RI    ++L+ K  +   + +   + +++ TR + E++   + ++   E+   L +L   
Sbjct: 26  RIDEANQKLLLKIQEREDKIQRLESEIIQ-TRGLVEDEEWEKENRTTMERERALQELEEE 84

Query: 256 KMRYYYKYNPMIIPVPVQQTRLTRGSISNVTTTKNSLNNSTEKTKVLIQR 405
             R   K   ++  +   Q +LTR S       ++S + + E+TKV +Q+
Sbjct: 85  TARLERKNKTLVHSITELQQKLTRKSQKITNCEQSSPDGALEETKVKLQQ 134


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,917,115
Number of Sequences: 237096
Number of extensions: 1239478
Number of successful extensions: 3030
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3023
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)