Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27m01
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.30 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    25   0.93 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 304 VQQTRLTRGSISNVTTTKNSLNNSTEKTKVLIQRPIPKFDELDDED 441
           +  T  T  + +  TTT N+  N++  T      P P+ DE+DD++
Sbjct: 661 ITTTTTTTTTTTTTTTTPNTTQNASATT------PPPQVDEVDDKE 700


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 69  IIKDQSDRGKIN*EKFESNYGNKNIRRTCSKTH 167
           II   S+R   N   ++ NY N N    C K +
Sbjct: 81  IISSLSNRTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 69  IIKDQSDRGKIN*EKFESNYGNKNIRRTCSKTH 167
           II   S++   N   ++ NY N N    C K +
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 69  IIKDQSDRGKIN*EKFESNYGNKNIRRTCSKTH 167
           II   S++   N   ++ NY N N    C K +
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 69  IIKDQSDRGKIN*EKFESNYGNKNIRRTCSKTH 167
           II   S++   N   ++ NY N N    C K +
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 568 KPLQPRTKNKDLEHHHV 618
           KP +P+TK K    +HV
Sbjct: 249 KPPKPQTKTKPTSPYHV 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,292
Number of Sequences: 438
Number of extensions: 2760
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)