Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27k07
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    62   4e-12
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.1  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 62.5 bits (145), Expect = 4e-12
 Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
 Frame = +1

Query: 163 GIPDLGIKPLDPLHI-SV-INGNQGGLELT--FKDTIVRGLS-GCHVEGVKNDPAKK-KQ 324
           G+    I P++PL + SV I  +QG + L   +K+  + GL+    ++    D  K    
Sbjct: 58  GLKSFKILPIEPLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILS 117

Query: 325 AVTIKCSVTLTGDYKLXGKLLVLPIEGEGKYNIKIRDIVIKTANDLVTVT-GADGKPHWH 501
           + +    V    DYK+ GK+L+LP+ G GK NI + D  +K+ ND+       +G+ +  
Sbjct: 118 SESYNPQVDFVADYKIEGKVLLLPVRGAGKSNITMYD--LKSHNDIYCEKYEKNGETYLR 175

Query: 502 IESWKHTYEVKTG-AHFQFENLFNGNKVLATPVEEFVNSNWKDVMQEV 642
           I+  KH  +        +FENLF+GNK L   +  F+N N + + +E+
Sbjct: 176 IK--KHAVKFNPAKVKLRFENLFDGNKELGEQMNRFINENSELLFKEL 221


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 137 KRQCRSWPPAFPT 175
           K  CRSW   FPT
Sbjct: 398 KNCCRSWLSKFPT 410


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 137 KRQCRSWPPAFPT 175
           K  CRSW   FPT
Sbjct: 398 KNCCRSWLSKFPT 410


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,404
Number of Sequences: 438
Number of extensions: 4451
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)