Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27i04
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   4.5  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   7.9  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   7.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.9  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 499 ELKLSEICHKEIPGHKEYRKYTEK 570
           E  +S  C +  PG K++RK   K
Sbjct: 85  EASVSLFCPRAKPGEKKFRKVITK 108


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = +1

Query: 265 RDRLDVMTKKQMNVFTPESEYLESTDSGFGESVNKASEERSCNLTQITKLREELI 429
           R R     +++ N +  E EY +  +     S +K   ERS     I+ L    I
Sbjct: 36  RKRYSRSREREQNSYKNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNNYI 90


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = +1

Query: 265 RDRLDVMTKKQMNVFTPESEYLESTDSGFGESVNKASEERSCNLTQITKLREELI 429
           R R     +++ N +  E EY +  +     S +K   ERS     I+ L    I
Sbjct: 36  RKRYSRSREREQNSYKNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNNYI 90


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +1

Query: 265 RDRLDVMTKKQMNVFTPESEYLESTDSGFGESVNKASEERSCNLTQITKLREELI 429
           R R     +++ N +  E EY +  ++    S ++   ERS     I+ L  + I
Sbjct: 36  RKRYSRSREREQNSYKNEKEYRKYRETSKERSRDRTERERSREPKIISSLSNKTI 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,236
Number of Sequences: 438
Number of extensions: 4039
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)