Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27f19
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.5  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   5.8  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   5.8  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   7.7  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +3

Query: 345 KSQLLWFCRKLSI*SRNNFESLSQTSTDATSIRPKTIITH 464
           K + LW    +S+ SR + E++ + ++      P+ +I+H
Sbjct: 95  KEEALWNFPMISVFSRQDIETIIRRNSRYPLRPPQEVISH 134


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 62  LFVWDT-SCVISYDYLVIYED 121
           LFV  T +CVI+ DY   Y+D
Sbjct: 7   LFVLVTITCVIAEDYTTKYDD 27


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 62  LFVWDT-SCVISYDYLVIYED 121
           LFV  T +CVI+ DY   Y+D
Sbjct: 7   LFVLVTITCVIAEDYTTKYDD 27


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 124 HNVNKQLWNYVNCCELFVY 180
           HN N   +NY N C+   Y
Sbjct: 91  HNNNNYKYNYNNNCKKLYY 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,715
Number of Sequences: 438
Number of extensions: 2967
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)