Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27f18
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.5  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   7.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   7.2  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.6  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   9.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 268 ISTAQFASLVAGKSDTICLCPPARPCAAGEA 360
           I+T + A L++G+S      PP  P  A +A
Sbjct: 364 IATKENAMLLSGRSQKSTTGPPPGPTPAQKA 394


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 325 KGILYHFCLPPARQIGQL 272
           KGI+Y   LPP R I  +
Sbjct: 76  KGIVYFELLPPNRTINSV 93


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 158 YPPFLLSN 135
           YPPF+LSN
Sbjct: 239 YPPFMLSN 246


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 368 SNLVRLTDKNYMTELEERIRAVNEENLNKRIS 463
           ++L  L +   +   E R+R +N+  LN+R S
Sbjct: 165 NSLCSLDNLQTLNLTENRLRDINDIGLNRRDS 196


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 158 YPPFLLSN 135
           YPPF+LSN
Sbjct: 239 YPPFMLSN 246


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 325 KGILYHFCLPPARQIGQL 272
           KGI+Y   LPP R I  +
Sbjct: 197 KGIVYFELLPPNRTINSV 214


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 580 HSPEHKYWVVEKFRRTLL*RGFSNKDQSFQSFHLIKHSARDSFVQIF 440
           H   H Y  +      LL R FS + +  Q+F  ++    DS V+ +
Sbjct: 133 HLAMHDYPPLVSGALHLLFRHFSQRQEVLQAFKQVQLLVSDSDVESY 179


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 580 HSPEHKYWVVEKFRRTLL*RGFSNKDQSFQSFHLIKHSARDSFVQIF 440
           H   H Y  +      LL R FS + +  Q+F  ++    DS V+ +
Sbjct: 101 HLAMHDYPPLVSGALHLLFRHFSQRQEVLQAFKQVQLLVSDSDVESY 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,072
Number of Sequences: 438
Number of extensions: 2740
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)