Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte27f02
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 233 2e-62
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom... 31 0.17
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom... 30 0.23
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 27 2.8
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 26 5.0
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 5.0
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 8.7
SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transf... 25 8.7
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 233 bits (569), Expect = 2e-62
Identities = 105/167 (62%), Positives = 131/167 (78%), Gaps = 2/167 (1%)
Frame = +1
Query: 121 PVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYN 300
PVV++ GDEMTR+IW +I+EKL+LP++DI+L YDLG+E RDKT+DQ+T+D A+AI K +
Sbjct: 19 PVVEMDGDEMTRVIWKIIREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAAKAILKND 78
Query: 301 VGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPI 480
VGIKCATITPDE RV+E+ LKKMWKSPNGTIRNIL GTVFRE I+ KNIP+ + GW PI
Sbjct: 79 VGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPILIKNIPKYIPGWTNPI 138
Query: 481 IIGRHAHADQYKATDFVVPGAGTLEIIFKPESGEAIKHV--VHEYKG 615
IGRHA DQYK+TD V G G LE+ F P+ + K V+E+ G
Sbjct: 139 CIGRHAFGDQYKSTDLVASGPGKLELSFTPKGNPSAKETYNVYEFNG 185
>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 30.7 bits (66), Expect = 0.17
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 133 ILGDEMTRIIWDLIKEKLILPFLDIELHVYDL-GMENRDKTDDQVTIDCAEAIKKYNVGI 309
I GD + R + + E + IE D+ GME +K+ + +++K+ VG+
Sbjct: 26 IPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNNKSSGDALHEAIQSLKRNKVGL 85
Query: 310 KCATITPDEK 339
K TP EK
Sbjct: 86 KGILFTPFEK 95
>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 30.3 bits (65), Expect = 0.23
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Frame = -2
Query: 615 TLVLMNYMFYCLTRFRFEDYFKSTSTWDNKVSCF--------VLISMSMTSNDDGFVPPC 460
+L +Y + C T F + K ++ + CF + I + +D GFV P
Sbjct: 237 SLFAHHYSYRCNTWFYLSKHMKKVASANMDAQCFYVQNSFYKITILYEIKFDDLGFVQPN 296
Query: 459 YKSRYILANNSLPENSTTKNITDGPIRAFPHFLQFKFF--NSLLI 331
Y YIL N + S T + + + F F+ F SLL+
Sbjct: 297 YCISYILKNQNEKIVSITSKLLNQLDKRFSEFVSLFGFREGSLLL 341
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -2
Query: 534 DNKVSCFVLISMSMTSNDDGFVPPCYKSRYILANNSLPENSTTKNITD 391
D+K + L+S +++S + VPP KSR I+A+ + +S K+ D
Sbjct: 536 DSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLDKDFQD 583
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 488 PMMMGLSHPVTSLGIFLQIIASLKTVP 408
P +MG + VT+ ++ II SLK +P
Sbjct: 253 PALMGYKNKVTAKATYMVIIQSLKHLP 279
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 181 KLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIK 291
+LI+ F D ELH + N+ + D AEA+K
Sbjct: 400 RLIMKFSDSELHTFLFHCVNKIVANTTENSDSAEAVK 436
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 423 PENSTTKNITDGPIRAFPHFLQFKFFNSLLIRSYGRTFDAHI 298
PEN TT ++ GP F + + L++ GRTF I
Sbjct: 598 PENITTILVSQGPAGVPFEFTHKRKDDENLLKDLGRTFQNFI 639
>SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transfer
protein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.0 bits (52), Expect = 8.7
Identities = 18/66 (27%), Positives = 24/66 (36%)
Frame = +1
Query: 412 TVFREAIICKNIPRLVTGWDKPIIIGRHAHADQYKATDFVVPGAGTLEIIFKPESGEAIK 591
T F AI C I + W G D +T +PGA + G+
Sbjct: 4 TTFIYAITCLPIFISASSWFSSFSFGESKSTDLVSSTSEKIPGANPASYCADWDRGD--D 61
Query: 592 HVVHEY 609
HVV +Y
Sbjct: 62 HVVVDY 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,379
Number of Sequences: 5004
Number of extensions: 53740
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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