Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27e14
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   5.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   9.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   9.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   9.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   9.6  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 78  DQHYFTRLHYLTHLGGIFPLLVDI 7
           + HY +  H  THL G   + V +
Sbjct: 120 NNHYTSHQHLRTHLRGTLTVNVSV 143


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = +2

Query: 26  NIPPRWV 46
           N+PPRW+
Sbjct: 676 NVPPRWI 682


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 122 ITTKVPPTSRTGMLSSLVSTGTP 190
           IT + PP   T      VS GTP
Sbjct: 608 ITIQEPPQWHTRSTEKRVSAGTP 630


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 256 KVVNYNHLMPTRYTVDFSFEKFSAKDLKDPA 348
           K++ YN    ++Y +  S  +  +  +KDPA
Sbjct: 387 KILGYNLEAASKYQIVPSALEIFSTSMKDPA 417


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 256 KVVNYNHLMPTRYTVDFSFEKFSAKDLKDPA 348
           K++ YN    ++Y +  S  +  +  +KDPA
Sbjct: 387 KILGYNLEAASKYQIVPSALEIFSTSMKDPA 417


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 253 VKVVNYNHLMPTRYTV 300
           V V+N++H  P RY +
Sbjct: 344 VLVLNFHHRTPDRYVM 359


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 253 VKVVNYNHLMPTRYTV 300
           V V+N++H  P RY +
Sbjct: 344 VLVLNFHHRTPDRYVM 359


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -1

Query: 230 LWILFFPILLCTFRGYLSIPATKA 159
           +W+ F P+ L  +  +  I A  A
Sbjct: 222 IWVYFVPLFLIIYSYWFIIQAVAA 245


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -2

Query: 220 YSFPSSCALSGGTCRYQRRKHARTAC 143
           + F S       T +Y  R HA  AC
Sbjct: 91  HKFSSVTLYRNKTVKYSARMHAIIAC 116


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 349 LQGLSGLLR*IFQS*SQLYNVLASSDYSL 263
           L G+ G+L  IF +        AS DYSL
Sbjct: 334 LHGMPGILGGIFGALMAALATEASYDYSL 362


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -1

Query: 230 LWILFFPILLCTFRGYLSIPATKA 159
           +W+ F P+ L  +  +  I A  A
Sbjct: 98  IWVYFVPLFLIIYSYWFIIQAVAA 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,336
Number of Sequences: 438
Number of extensions: 2752
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)