Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27e10
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    28   0.95 
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    28   1.3  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    27   1.7  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   1.7  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    27   2.2  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     27   2.9  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    27   2.9  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    27   2.9  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    26   3.8  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.1  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   5.1  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    25   6.7  
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    25   6.7  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   8.8  
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    25   8.8  

>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +3

Query: 117 KNLKVGTKNVIRKKLISPEKILLPPLHIKLGMMKEFVKALDKNNASFE 260
           K ++V  +N    K ++ E+I+   L I+LG++   VK  D  N+SFE
Sbjct: 631 KEMEVLCENNDLSKQLTSEEIVHMKLLIQLGLLSVKVKNGDYENSSFE 678


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 225 VKALDKNNASFEYLCKKIPRLSDAKIKEGVFDGPQIRSLMADEKFDVTMNNTESDAWLAF 404
           + ++D   + F Y+C+++PR   AKI     D   +   ++   F    +N   D    F
Sbjct: 60  IPSIDLPPSFFNYVCEQLPRHPFAKIASSYIDTHTLFFQISISSFLCRFSNCSEDEIRLF 119

Query: 405 K--DAVNNFL 428
           K   ++++FL
Sbjct: 120 KQHQSLDSFL 129


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +3

Query: 198 IKLGMMKEFVKALDKNNASFEYLCKKIPRLSD--AKIKEGVFDGPQIRSLMADEKFDVTM 371
           ++ G +KE V   ++N   FE + +K P   +  AK   G+    Q+RS +  E F+ T+
Sbjct: 334 LRCGFLKEAVDFTEENRDLFEKVAEKFPFYINAYAKAPNGILP-RQLRSQLFSE-FNQTI 391

Query: 372 NNTESDAWLAFKDAVNNFLG 431
              ES     +K AV   +G
Sbjct: 392 RLQESSD--PYKYAVYKIIG 409


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 372 NNTESDAWLAFKDAVNNFLGNN-KHPDYKNKVANLLDKYQKLGC 500
           +N+ +   L  K  VN  LG+   H D+KN++   ++ +++L C
Sbjct: 662 SNSVTHRALLLKLCVNKLLGSLLDHNDFKNRLETAIETFRELPC 705


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 456 NKVANLLDKYQKLGCNMSIKLHFLDSHVDFF 548
           N+V N L   Q +  +   ++HFL++H+  F
Sbjct: 80  NRVCNALALLQCIASHPETRIHFLNAHITLF 110


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
 Frame = +3

Query: 192 LHIKLGMMKEFVKALDKN--NASFEYLCKKI-PR---LSDAKIKEGVFDGPQIRSL--MA 347
           LH     MK F+K LDKN    ++  +  K+ P+   L +   K+ + D P+++ +    
Sbjct: 15  LHPNKVEMKPFLKNLDKNLFKKTYNLVAAKVSPKKVGLLNKVCKKDLLDWPRVKHVYQQN 74

Query: 348 DEKFDVTMNNTESDAWLAFKDAVNNFLGNN 437
           +EK  +   +   D      DA  +F+  N
Sbjct: 75  NEKLVLLNRDASLDGTRGLSDATVSFIKEN 104


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = -2

Query: 597 DETFLPVLHCNH-----QDYQEK-SPHVNLESGVLCSYYTPIFDTYPISLQPYFYSRDVY 436
           +ETFLP L         Q+  EK S HV+ ES  +   +  ++D     L P    +  Y
Sbjct: 418 NETFLPKLKAERELLSKQESMEKQSMHVDEESNQILEKFLDVYDIIKAKLPPNVAEKVDY 477

Query: 435 Y 433
           Y
Sbjct: 478 Y 478


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 387 DAWLAFKDAVNNFLGNNKHPDYKNK 461
           D+W  F D  NN      HPDY+NK
Sbjct: 524 DSW--FNDTENNGHAQWVHPDYRNK 546


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 420 NFLGNNKHPDYKNKVANLLDKYQKLGCNMSIKLHFLDSHVDFFPDNL 560
           +++ + KHP+YKN     ++KY K G     K+   D     F +N+
Sbjct: 78  HYVSSPKHPNYKN-----IEKYLKPGWLFGQKVDSADFQYSAFRENM 119


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +1

Query: 451  IKIRLQTYWISI---KNWGVI*A*NSTF*IHMWTFFLIILVITV 573
            I + LQ YW+S    ++W  + + ++   +H W  FL++++  V
Sbjct: 2190 ISVFLQNYWMSSVYGRSWAFMWSAHN---VHKWAMFLLVILFYV 2230


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 403 NASQASDSVLFIVTSNFSSAIKDLICGPSNTPSLIFASDNLGI 275
           + S+ +D +L  V  +  S    ++ GP +TP+L F S + GI
Sbjct: 430 SVSKGADDILQHVL-HLKSEQTGVVVGPDSTPTLSFTSGSEGI 471


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 255 FEYLCKKIPRLSDAKIKEGVFDGPQIRSLMADEKF 359
           F    K   +LSD K  E +   P+  SL+AD  F
Sbjct: 127 FNPFAKLGSQLSDPKFMEKLASNPETASLLADSAF 161


>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 10  FFILFFTYIQNFHASCASGTVEHETSTTFKNNG 108
           F +LF  Y    H+ C    +E E +  F  NG
Sbjct: 14  FILLFLVYYYLTHSHCPRKQLEGEETCVFIENG 46


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 367 VTSNFSSAIKDLICGPSNTPSLIFASDNLGIFLHRYSKL 251
           V  N S++++DL    SN PS    S NL   +  Y+ L
Sbjct: 308 VNDNVSTSVRDLTAADSNKPST--TSKNLKFTIMSYNVL 344


>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 190 GGSKIFSGLINFFRITFFVPTLRFL-RGF 107
           GG + F+GL++ +R T+    LR L RGF
Sbjct: 170 GGERQFNGLVDVYRKTYRSDGLRGLYRGF 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,405
Number of Sequences: 5004
Number of extensions: 57938
Number of successful extensions: 193
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)