Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27e09
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   3.5  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    25   4.6  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    24   8.0  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 72   KTFKYLLRLKVES*STPDLDTITKLYGHEYLENGRTELRKLLEHSGSYFT 221
            + F  L++    S  T  ++ + K  GH+++     E   L E+ G+Y T
Sbjct: 893  RMFPILIQGPTSSGKTSMIEYVAKKTGHKFVRINNHEHTDLQEYIGTYVT 942


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 260 NVINR*SDISIGLMAKFYLPVKSPRRIR 343
           N  ++ S I+IG++ + YLP   P  ++
Sbjct: 710 NAASKDSQIAIGILGERYLPADEPSSVK 737


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 153 HEYLENGRTELRKLLEHSGSYFTQISER 236
           +E  E    ELR   EHS ++ T++S+R
Sbjct: 304 YEAAEKVVLELRSYTEHSLAFLTKVSKR 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,509,431
Number of Sequences: 5004
Number of extensions: 27349
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)