Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27e09
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042           47   5e-06
01_01_0689 - 5287110-5287209,5287444-5287691,5287935-5288107,528...    28   3.3  
02_05_0825 - 32042128-32042238,32042905-32043246,32043548-32043727     27   7.7  
02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855...    27   7.7  

>08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042
          Length = 104

 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 20/48 (41%), Positives = 29/48 (60%)
 Frame = +1

Query: 163 WRMAGLNYVNYSNIAARTLRKSLKGNLKEEASKRDKSLIRYFYWANGE 306
           WR AG+ Y+ YSN+ A  +R+ LK   K EA+ R+K       WA+G+
Sbjct: 11  WRAAGMTYIGYSNVCAALVRRCLKEPHKSEAASREKVHFAISKWADGK 58


>01_01_0689 -
           5287110-5287209,5287444-5287691,5287935-5288107,
           5288913-5289060,5289537-5289696,5290021-5290166,
           5290963-5291191,5291901-5292123,5292253-5292401,
           5293501-5293670,5294188-5294259,5294363-5294443,
           5296180-5296311,5296381-5296468,5296841-5297054,
           5297501-5297684,5298069-5298152,5299002-5299131,
           5299280-5299650,5299684-5299967,5300932-5301247
          Length = 1233

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 129 DTITKLYGHEYLENGRTELRKLL 197
           DT+ K++   Y+EN RT L+K++
Sbjct: 388 DTVVKIFKGPYIENTRTHLQKVV 410


>02_05_0825 - 32042128-32042238,32042905-32043246,32043548-32043727
          Length = 210

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 132 TITKLYGHEYLENGRTELRKLLEHSGSY 215
           ++    GHE LENGR    ++LE  G +
Sbjct: 62  SVNNKLGHELLENGRAACGEMLEAVGRH 89


>02_05_0338 -
           28084169-28084366,28084414-28085225,28085565-28085595,
           28085638-28086214,28086439-28087145,28087188-28087228,
           28087253-28087366,28087517-28088108
          Length = 1023

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 322 DRQVKFRH*PNRNI*LTIYHVWM--LPPLSFL 233
           DR++K    PNRN   T Y +W+   P LS+L
Sbjct: 478 DRKIKRLRVPNRNKDKTPYEIWIGRKPSLSYL 509


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,891,435
Number of Sequences: 37544
Number of extensions: 152183
Number of successful extensions: 305
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)