Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27e08
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    28   0.83 
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    27   1.9  
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ...    26   3.4  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    25   5.9  
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    25   5.9  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   7.8  

>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +3

Query: 192 NEPSLALYRLQEHVRKALPPMVERR-VEVTKLQYELQGRCYD-VEYALSAVKSMDGAATS 365
           N+ SLAL + +  V +AL  + ERR + ++K ++ +   CY  + Y   A       AT 
Sbjct: 204 NDNSLALQKSKVFVNRALLTLPERRSLNLSKSEFVVSLACYILLVYTEIAFADTTEWATY 263

Query: 366 FKNIQEMLKQ 395
           F N   M+ +
Sbjct: 264 FLNAYNMINK 273


>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +3

Query: 297 QGRCYDVEYALSAVKSMDGAAT 362
           QGR + VEYAL A+K   G+AT
Sbjct: 16  QGRLHQVEYALEAIK--QGSAT 35


>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 229

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 219 LQEHVRKALPPMVERRVEVTKLQYE 293
           +QEH R  + P +ERR+E  +++ E
Sbjct: 34  VQEHSRMRIDPALERRLERKRMEAE 58


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 465 TQNWNLFYFSYFLHILVAALKICTVLTFLVCF 370
           T++W+ F++S +LH++   L+   V   L  F
Sbjct: 286 TKSWHYFHYSEWLHMIYGFLRAQFVFFLLRTF 317


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = -1

Query: 352 PSIDFTALNAYSTS*HLPCNSYCSFVTSTLLSTIGGKAFLTCSCNLYSASEGSL-ATMCI 176
           PSI    L+ Y        N+Y S +    +S      FLT  CN+Y  SE        I
Sbjct: 83  PSICKWILDTYLPLFKKSNNAYPSKIAFNPISNTTLVLFLTECCNIYLFSENKKPVDQKI 142

Query: 175 FSDILSAAF 149
            SD+L   F
Sbjct: 143 RSDLLEQTF 151


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 238 FLTCSCNLYSASEGSLATMCIFSDILSAAFFALVSNSASP 119
           +L   CN+ S +   +AT+     IL A FF +   S  P
Sbjct: 390 YLRTKCNIMSGARTQVATIACSVLILLATFFIMPVFSTVP 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,631,010
Number of Sequences: 5004
Number of extensions: 29465
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)