Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27e08
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0339 - 3003626-3004070,3004467-3004636,3004907-3005020,300...    36   0.017
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739...    29   1.4  
09_03_0096 + 12328116-12329561,12329810-12329852,12332119-123322...    28   4.4  
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750...    28   4.4  
03_02_1011 + 13198641-13198899,13199471-13199604,13199805-131999...    27   5.8  

>08_01_0339 -
           3003626-3004070,3004467-3004636,3004907-3005020,
           3005592-3005704,3005848-3005926
          Length = 306

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 19/75 (25%), Positives = 43/75 (57%)
 Frame = +3

Query: 165 ISENMHIVANEPSLALYRLQEHVRKALPPMVERRVEVTKLQYELQGRCYDVEYALSAVKS 344
           + E +  VANEPS+ LY +Q+H + ++P +++ + +V    + +  +    +Y +  +K 
Sbjct: 31  VDEMIKYVANEPSVGLYFVQQHAQASMPLLLDVKGQVGIAGHIICVKQVFYQYIVQQLK- 89

Query: 345 MDGAATSFKNIQEML 389
                +S+KN++E +
Sbjct: 90  ----GSSYKNMEEQM 100


>07_03_1567 - 27772815-27773302,27773471-27773561,27773641-27773988,
            27774929-27775110,27775191-27775368,27775453-27775605,
            27775993-27776232,27776369-27776449,27776485-27776730,
            27777151-27777240,27777536-27777778,27778365-27778529,
            27779017-27779080,27779162-27779286,27779383-27779476,
            27779647-27779714,27779798-27779989,27780618-27780752,
            27780847-27780934,27781014-27781107,27781484-27781547,
            27781657-27781708,27781911-27782014,27782099-27782158,
            27782687-27782770,27782892-27783125,27783442-27783864,
            27784675-27784736,27784867-27785521
          Length = 1700

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +3

Query: 210  LYRLQEHVRKALPPMVER--RVEVTKLQYELQGRCYDVEYALSAVKSMDGAATSFKNIQE 383
            L R+ + V K+LPP +ER  RV+++ LQ +      +  +  +  K + G   S  NI  
Sbjct: 816  LRRVIKDVEKSLPPKIERILRVDMSPLQKQYYKWILERNFQ-NLNKGVRGNQVSLLNIVV 874

Query: 384  MLKQC 398
             LK+C
Sbjct: 875  ELKKC 879


>09_03_0096 +
           12328116-12329561,12329810-12329852,12332119-12332237,
           12333326-12333853
          Length = 711

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 189 ANEPSLALYRLQEHVRKALPPMVERRVEVTKLQYELQGRCY 311
           A E +LAL   +   R++     ERR+E  + + E++ RC+
Sbjct: 545 AKEENLALAEQEHAKRESAKANAERRLEEIRQKTEVESRCF 585


>07_03_1424 -
           26474464-26474514,26474549-26474635,26474905-26475006,
           26475149-26475260,26475405-26475463,26475559-26475633,
           26475734-26475832,26476128-26476343,26476426-26476500,
           26476583-26476670,26476757-26476902,26477240-26477347,
           26477417-26478436,26478437-26478715,26479471-26480520,
           26480636-26480692,26480780-26480837,26481379-26481458,
           26481598-26481654,26481764-26481833,26481967-26482202,
           26482341-26482445,26482534-26482680,26482758-26482823,
           26482916-26482979,26484040-26484200,26484308-26484400,
           26484487-26484600,26484684-26484803,26484893-26484976,
           26485061-26485216,26485389-26485811
          Length = 1885

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 213 YRLQEHVRKALPPMVERRVEVTKLQYELQ 299
           + + EHV KA+   +E+   +++LQ ELQ
Sbjct: 913 HSVSEHVEKAMKVSIEKEKIISRLQIELQ 941


>03_02_1011 +
           13198641-13198899,13199471-13199604,13199805-13199934,
           13200290-13200450,13200587-13200688,13200786-13200890,
           13200965-13201093,13201180-13201320,13201855-13201955,
           13202300-13202357,13202656-13202943
          Length = 535

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 129 ELETXXXXXXERISENMHIVANEPSLALYRLQEHVRKA 242
           ELE        R+S N +++  E  L L  LQ+H ++A
Sbjct: 96  ELEFFREELQSRLSNNYNVILKERKLPLSLLQDHQKQA 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,883,454
Number of Sequences: 37544
Number of extensions: 171126
Number of successful extensions: 339
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)