Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27e08
         (475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   5.1  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   6.7  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   6.7  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   6.7  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   6.7  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   8.9  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   8.9  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 289 YC-SFVTSTLLSTIGGKAFLTCSCNLYSASEGSLATMCIFSDILSAAFFALVSNSA 125
           +C + VTS   + I G+AF   +   YS S  +     IF+     AF  +++  A
Sbjct: 289 FCVNIVTSYCKTCISGRAFQVLTWLGYSNSAFNPIIYSIFNTEFREAFKRILTKGA 344


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 256 WKEELRSQNYNMNCK 300
           +K    + NYN NCK
Sbjct: 96  YKYNYNNNNYNNNCK 110


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 256 WKEELRSQNYNMNCK 300
           +K    + NYN NCK
Sbjct: 96  YKYNYNNNNYNNNCK 110


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 256 WKEELRSQNYNMNCK 300
           +K    + NYN NCK
Sbjct: 96  YKYNYNNNNYNNNCK 110


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 256 WKEELRSQNYNMNCK 300
           +K    + NYN NCK
Sbjct: 96  YKYNYNNNNYNNNCK 110


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 220 NLYSASEGSLATMCIFSDILSAAFFALVSNSAS 122
           NL    +G+   M   SD +     A+VSNSAS
Sbjct: 10  NLKDRFDGASRVMVSNSDRVRGNGNAIVSNSAS 42


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 220 NLYSASEGSLATMCIFSDILSAAFFALVSNSAS 122
           NL    +G+   M   SD +     A+VSNSAS
Sbjct: 11  NLKDRFDGASRVMVSNSDRVRGNGNAIVSNSAS 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,315
Number of Sequences: 438
Number of extensions: 1850
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)